Analysis of interatomic Contacts of Structural Units in PDB entry:
6LDV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6LDV entry

There are 4 chains in PDB entry 6LDV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
H
 GLN 1PRO 211
L
 ALA 1ASP 214
P
 GLY 8GLY 8
P
 GLY 10PRO 14
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 8 helices in PDB entry 6LDV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
H
60 63Right-handed 310
Helix 2
AA2
H
83 87Right-handed 310
Helix 3
AA3
H
157 159Right-handed 310
Helix 4
AA4
H
199 202Right-handed 310
Helix 5
AA5
L
29 33Right-handed 310
Helix 6
AA6
L
81 85Right-handed 310
Helix 7
AA7
L
125 131Right-handed alpha
Helix 8
AA8
L
186 191Right-handed alpha
Back to top of page

There are 11 sheets in PDB entry 6LDV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
2 6first strand
Strand 2
H
17 24anti-parallel
Strand 3
H
74 79anti-parallel
Strand 4
H
66 70anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
10 11first strand
Strand 2
H
108 112parallel
Strand 3
H
88 95anti-parallel
Strand 4
H
33 38anti-parallel
Strand 5
H
45 50anti-parallel
Strand 6
H
56 58anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
10 11first strand
Strand 2
H
108 112parallel
Strand 3
H
88 95anti-parallel
Strand 4
H
101 104anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
121 125first strand
Strand 2
H
137 146anti-parallel
Strand 3
H
177 185anti-parallel
Strand 4
H
165 166anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
121 125first strand
Strand 2
H
137 146anti-parallel
Strand 3
H
177 185anti-parallel
Strand 4
H
170 171anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
152 155first strand
Strand 2
H
192 198anti-parallel
Strand 3
H
203 209anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
4 6first strand
Strand 2
L
19 25anti-parallel
Strand 3
L
72 77anti-parallel
Strand 4
L
64 69anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
11 14first strand
Strand 2
L
106 111parallel
Strand 3
L
86 93anti-parallel
Strand 4
L
35 40anti-parallel
Strand 5
L
47 51anti-parallel
Strand 6
L
55 56anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
11 14first strand
Strand 2
L
106 111parallel
Strand 3
L
86 93anti-parallel
Strand 4
L
100 102anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
118 122first strand
Strand 2
L
133 143anti-parallel
Strand 3
L
176 185anti-parallel
Strand 4
L
162 166anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
156 158first strand
Strand 2
L
148 153anti-parallel
Strand 3
L
194 201anti-parallel
Strand 4
L
204 211anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il