Analysis of interatomic Contacts of Structural Units in PDB entry:
6LDW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6LDW entry

There are 8 chains in PDB entry 6LDW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
L
 GLN 2ASP 213
H
 GLN 1SER 210
A
 GLN 2ASP 213
B
 GLN 1SER 210
D
 ILE 3GLY 8
D
 GLY 10GLY 11
C
 ILE 3GLY 8
C
 GLY 10GLY 11
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 6LDW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
L
29 33Right-handed 310
Helix 2
AA2
L
81 85Right-handed 310
Helix 3
AA3
L
124 129Right-handed alpha
Helix 4
AA4
L
185 191Right-handed alpha
Helix 5
AA5
H
61 64Right-handed 310
Helix 6
AA6
H
84 88Right-handed 310
Helix 7
AA7
H
155 157Right-handed 310
Helix 8
AA8
H
197 200Right-handed 310
Helix 9
AA9
A
29 33Right-handed 310
Helix 10
AB1
A
81 85Right-handed 310
Helix 11
AB2
A
126 130Right-handed 310
Helix 12
AB3
A
185 189Right-handed alpha
Helix 13
AB4
B
61 64Right-handed 310
Helix 14
AB5
B
84 88Right-handed 310
Helix 15
AB6
B
155 157Right-handed 310
Helix 16
AB7
B
197 200Right-handed 310
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There are 20 sheets in PDB entry 6LDW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
4 7first strand
Strand 2
L
19 25anti-parallel
Strand 3
L
72 77anti-parallel
Strand 4
L
64 69anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 14first strand
Strand 2
L
105 110parallel
Strand 3
L
86 92anti-parallel
Strand 4
L
35 40anti-parallel
Strand 5
L
47 51anti-parallel
Strand 6
L
55 56anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
117 121first strand
Strand 2
L
132 142anti-parallel
Strand 3
L
175 184anti-parallel
Strand 4
L
161 165anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
155 156first strand
Strand 2
L
147 152anti-parallel
Strand 3
L
193 200anti-parallel
Strand 4
L
203 210anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
2 6first strand
Strand 2
H
17 24anti-parallel
Strand 3
H
76 80anti-parallel
Strand 4
H
67 71anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
10 11first strand
Strand 2
H
106 110parallel
Strand 3
H
89 95anti-parallel
Strand 4
H
33 38anti-parallel
Strand 5
H
44 50anti-parallel
Strand 6
H
57 59anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
10 11first strand
Strand 2
H
106 110parallel
Strand 3
H
89 95anti-parallel
Strand 4
H
101 102anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
119 123first strand
Strand 2
H
136 144anti-parallel
Strand 3
H
175 182anti-parallel
Strand 4
H
162 164anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
119 123first strand
Strand 2
H
136 144anti-parallel
Strand 3
H
175 182anti-parallel
Strand 4
H
168 169anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
150 153first strand
Strand 2
H
190 196anti-parallel
Strand 3
H
201 207anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 7first strand
Strand 2
A
19 25anti-parallel
Strand 3
A
72 77anti-parallel
Strand 4
A
64 69anti-parallel
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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 14first strand
Strand 2
A
105 110parallel
Strand 3
A
86 92anti-parallel
Strand 4
A
35 40anti-parallel
Strand 5
A
47 51anti-parallel
Strand 6
A
55 56anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
117 121first strand
Strand 2
A
132 142anti-parallel
Strand 3
A
175 184anti-parallel
Strand 4
A
161 165anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
155 156first strand
Strand 2
A
147 152anti-parallel
Strand 3
A
193 200anti-parallel
Strand 4
A
203 210anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 6first strand
Strand 2
B
17 24anti-parallel
Strand 3
B
76 80anti-parallel
Strand 4
B
67 71anti-parallel
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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 11first strand
Strand 2
B
106 110parallel
Strand 3
B
89 95anti-parallel
Strand 4
B
33 38anti-parallel
Strand 5
B
45 50anti-parallel
Strand 6
B
57 59anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 11first strand
Strand 2
B
106 110parallel
Strand 3
B
89 95anti-parallel
Strand 4
B
101 102anti-parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
119 123first strand
Strand 2
B
136 144anti-parallel
Strand 3
B
175 182anti-parallel
Strand 4
B
162 164anti-parallel
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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
119 123first strand
Strand 2
B
136 144anti-parallel
Strand 3
B
175 182anti-parallel
Strand 4
B
168 169anti-parallel
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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
150 153first strand
Strand 2
B
190 196anti-parallel
Strand 3
B
201 207anti-parallel
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