Analysis of interatomic Contacts of Structural Units in PDB entry:
6LFD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6LFD entry

There are 4 chains in PDB entry 6LFD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 4ALA 222
B
 GLY 4SER 223
C
 GLY 4ALA 222
D
 GLY 4ALA 222
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 6LFD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
53 66Right-handed alpha
Helix 2
AA2
A
80 85Right-handed alpha
Helix 3
AA3
A
86 93Right-handed alpha
Helix 4
AA4
A
101 110Right-handed alpha
Helix 5
AA5
A
159 161Right-handed 310
Helix 6
AA6
A
179 191Right-handed alpha
Helix 7
AA7
A
207 222Right-handed alpha
Helix 8
AA8
B
53 67Right-handed alpha
Helix 9
AA9
B
80 85Right-handed alpha
Helix 10
AB1
B
86 93Right-handed alpha
Helix 11
AB2
B
101 110Right-handed alpha
Helix 12
AB3
B
159 161Right-handed 310
Helix 13
AB4
B
179 191Right-handed alpha
Helix 14
AB5
B
207 222Right-handed alpha
Helix 15
AB6
C
53 67Right-handed alpha
Helix 16
AB7
C
80 85Right-handed alpha
Helix 17
AB8
C
86 93Right-handed alpha
Helix 18
AB9
C
101 110Right-handed alpha
Helix 19
AC1
C
159 161Right-handed 310
Helix 20
AC2
C
179 191Right-handed alpha
Helix 21
AC3
C
207 222Right-handed alpha
Helix 22
AC4
D
53 66Right-handed alpha
Helix 23
AC5
D
80 85Right-handed alpha
Helix 24
AC6
D
86 93Right-handed alpha
Helix 25
AC7
D
101 110Right-handed alpha
Helix 26
AC8
D
159 161Right-handed 310
Helix 27
AC9
D
179 191Right-handed alpha
Helix 28
AD1
D
207 221Right-handed alpha
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There are 8 sheets in PDB entry 6LFD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 14first strand
Strand 2
A
17 25anti-parallel
Strand 3
A
31 41anti-parallel
Strand 4
A
44 48anti-parallel
Strand 5
A
70 75parallel
Strand 6
A
96 100parallel
Strand 7
A
117 119parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 127first strand
Strand 2
A
131 134anti-parallel
Strand 3
A
146 149anti-parallel
Strand 4
A
154 158anti-parallel
Strand 5
A
196 199parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 14first strand
Strand 2
B
17 26anti-parallel
Strand 3
B
30 41anti-parallel
Strand 4
B
44 48anti-parallel
Strand 5
B
70 75parallel
Strand 6
B
96 100parallel
Strand 7
B
117 119parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
123 127first strand
Strand 2
B
131 134anti-parallel
Strand 3
B
146 149anti-parallel
Strand 4
B
154 158anti-parallel
Strand 5
B
196 199parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
8 14first strand
Strand 2
C
17 25anti-parallel
Strand 3
C
31 41anti-parallel
Strand 4
C
44 48anti-parallel
Strand 5
C
70 75parallel
Strand 6
C
96 100parallel
Strand 7
C
117 119parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
123 127first strand
Strand 2
C
131 134anti-parallel
Strand 3
C
146 149anti-parallel
Strand 4
C
154 158anti-parallel
Strand 5
C
196 199parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
8 14first strand
Strand 2
D
17 26anti-parallel
Strand 3
D
30 41anti-parallel
Strand 4
D
44 48anti-parallel
Strand 5
D
70 75parallel
Strand 6
D
96 100parallel
Strand 7
D
117 119parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
123 127first strand
Strand 2
D
131 134anti-parallel
Strand 3
D
146 149anti-parallel
Strand 4
D
154 158anti-parallel
Strand 5
D
196 199parallel
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