Analysis of interatomic Contacts of Structural Units in PDB entry:
6LFJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6LFJ entry

There are 2 chains in PDB entry 6LFJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 75ILE 207
B
 SER 76ILE 207
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 6LFJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
100 111Right-handed alpha
Helix 2
AA2
A
120 130Right-handed alpha
Helix 3
AA3
A
158 162Right-handed 310
Helix 4
AA4
B
100 111Right-handed alpha
Helix 5
AA5
B
120 130Right-handed alpha
Helix 6
AA6
B
158 162Right-handed 310
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There are 6 sheets in PDB entry 6LFJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 85first strand
Strand 2
A
88 91anti-parallel
Strand 3
A
202 205anti-parallel
Strand 4
A
114 115anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 151first strand
Strand 2
A
137 143anti-parallel
Strand 3
A
176 182anti-parallel
Strand 4
A
186 192anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 151first strand
Strand 2
A
137 143anti-parallel
Strand 3
A
199 200parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
83 85first strand
Strand 2
B
88 91anti-parallel
Strand 3
B
202 205anti-parallel
Strand 4
B
114 115anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
149 151first strand
Strand 2
B
137 143anti-parallel
Strand 3
B
176 182anti-parallel
Strand 4
B
186 192anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
149 151first strand
Strand 2
B
137 143anti-parallel
Strand 3
B
199 200parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il