Analysis of interatomic Contacts of Structural Units in PDB entry:
6LFM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6LFM entry

There are 7 chains in PDB entry 6LFM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	CYS 3	PHE 354
B	GLU 3	ASN 340
C	ALA 7	GLU 63
D	ALA 2	SER 72
E	ARG 6	SER 72
R	SER 26	HIS 332
S	VAL 2	LEU 235

There are 39 helices in PDB entry 6LFM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	8	31	Right-handed alpha
Helix 2	AA2	A	45	50	Right-handed alpha
Helix 3	AA3	A	207	212	Right-handed alpha
Helix 4	AA4	A	213	216	Right-handed 310
Helix 5	AA5	A	228	231	Right-handed 310
Helix 6	AA6	A	241	255	Right-handed alpha
Helix 7	AA7	A	270	279	Right-handed alpha
Helix 8	AA8	A	295	308	Right-handed alpha
Helix 9	AA9	A	329	352	Right-handed alpha
Helix 10	AB1	B	4	24	Right-handed alpha
Helix 11	AB2	B	29	34	Right-handed alpha
Helix 12	AB3	B	280	282	Right-handed 310
Helix 13	AB4	C	8	23	Right-handed alpha
Helix 14	AB5	C	29	44	Right-handed alpha
Helix 15	AB6	C	45	48	Right-handed 310
Helix 16	AB7	D	18	22	Right-handed 310
Helix 17	AB8	D	57	70	Right-handed alpha
Helix 18	AB9	E	55	60	Right-handed alpha
Helix 19	AC1	E	60	70	Right-handed alpha
Helix 20	AC2	R	46	60	Right-handed alpha
Helix 21	AC3	R	60	75	Right-handed alpha
Helix 22	AC4	R	81	98	Right-handed alpha
Helix 23	AC5	R	100	111	Right-handed alpha
Helix 24	AC6	R	115	136	Right-handed alpha
Helix 25	AC7	R	139	147	Right-handed alpha
Helix 26	AC8	R	155	161	Right-handed alpha
Helix 27	AC9	R	161	177	Right-handed alpha
Helix 28	AD1	R	177	182	Right-handed alpha
Helix 29	AD2	R	207	214	Right-handed alpha
Helix 30	AD3	R	214	219	Right-handed alpha
Helix 31	AD4	R	220	229	Right-handed alpha
Helix 32	AD5	R	230	241	Right-handed alpha
Helix 33	AD6	R	245	279	Right-handed alpha
Helix 34	AD7	R	285	315	Right-handed alpha
Helix 35	AD8	R	318	332	Right-handed alpha
Helix 36	AD9	S	28	32	Right-handed 310
Helix 37	AE1	S	52	56	Right-handed 310
Helix 38	AE2	S	87	91	Right-handed 310
Helix 39	AE3	S	208	212	Right-handed 310

There are 19 sheets in PDB entry 6LFM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	184	187	first strand
Strand 2	A	196	201	anti-parallel
Strand 3	A	34	38	parallel
Strand 4	A	220	221	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	223	226	first strand
Strand 2	A	265	269	parallel
Strand 3	A	320	323	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	51	first strand
Strand 2	B	336	340	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	317	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	91	94	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	105	first strand
Strand 2	B	111	114	anti-parallel
Strand 3	B	121	125	anti-parallel
Strand 4	B	134	139	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	153	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	166	170	anti-parallel
Strand 4	B	176	180	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	189	192	first strand
Strand 2	B	198	202	anti-parallel
Strand 3	B	208	212	anti-parallel
Strand 4	B	220	222	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	241	245	anti-parallel
Strand 3	B	250	253	anti-parallel
Strand 4	B	260	264	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	295	298	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	48	49	first strand
Strand 2	D	38	42	anti-parallel
Strand 3	D	24	28	anti-parallel
Strand 4	E	22	28	anti-parallel
Strand 5	E	38	43	anti-parallel
Strand 6	E	49	50	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	184	185	first strand
Strand 2	R	197	198	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	3	4	first strand
Strand 2	S	24	25	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	17	21	first strand
Strand 2	S	78	84	anti-parallel
Strand 3	S	68	73	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	45	50	first strand
Strand 2	S	35	39	anti-parallel
Strand 3	S	92	95	anti-parallel
Strand 4	S	115	117	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	135	136	first strand
Strand 2	S	231	234	parallel
Strand 3	S	213	215	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	144	148	first strand
Strand 2	S	199	204	anti-parallel
Strand 3	S	191	195	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	162	163	first strand
Strand 2	S	218	219	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	165	166	first strand
Strand 2	S	174	175	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	177	178	first strand
Strand 2	S	182	183	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6LFM

Analysis of interatomic Contacts of Structural Units in PDB entry:
6LFM