Analysis of interatomic Contacts of Structural Units in PDB entry:
6LFN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6LFN entry

There are 2 chains in PDB entry 6LFN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 13VAL 468
B
 GLY 0VAL 468
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 42 helices in PDB entry 6LFN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 41Right-handed alpha
Helix 2
AA2
A
55 69Right-handed alpha
Helix 3
AA3
A
92 105Right-handed alpha
Helix 4
AA4
A
107 114Right-handed alpha
Helix 5
AA5
A
128 139Right-handed alpha
Helix 6
AA6
A
150 160Right-handed alpha
Helix 7
AA7
A
163 170Right-handed alpha
Helix 8
AA8
A
188 190Right-handed 310
Helix 9
AA9
A
191 196Right-handed alpha
Helix 10
AB1
A
199 212Right-handed alpha
Helix 11
AB2
A
213 215Right-handed 310
Helix 12
AB3
A
227 236Right-handed alpha
Helix 13
AB4
A
263 268Right-handed alpha
Helix 14
AB5
A
286 301Right-handed alpha
Helix 15
AB6
A
329 335Right-handed alpha
Helix 16
AB7
A
346 352Right-handed alpha
Helix 17
AB8
A
364 375Right-handed alpha
Helix 18
AB9
A
386 397Right-handed alpha
Helix 19
AC1
A
416 430Right-handed alpha
Helix 20
AC2
A
430 449Right-handed alpha
Helix 21
AC3
A
452 466Right-handed alpha
Helix 22
AC4
B
24 41Right-handed alpha
Helix 23
AC5
B
55 69Right-handed alpha
Helix 24
AC6
B
83 87Right-handed 310
Helix 25
AC7
B
93 104Right-handed alpha
Helix 26
AC8
B
107 114Right-handed alpha
Helix 27
AC9
B
128 139Right-handed alpha
Helix 28
AD1
B
150 160Right-handed alpha
Helix 29
AD2
B
163 170Right-handed alpha
Helix 30
AD3
B
188 190Right-handed 310
Helix 31
AD4
B
191 196Right-handed alpha
Helix 32
AD5
B
199 212Right-handed alpha
Helix 33
AD6
B
213 215Right-handed 310
Helix 34
AD7
B
227 236Right-handed alpha
Helix 35
AD8
B
265 269Right-handed 310
Helix 36
AD9
B
286 301Right-handed alpha
Helix 37
AE1
B
346 352Right-handed alpha
Helix 38
AE2
B
364 375Right-handed alpha
Helix 39
AE3
B
386 398Right-handed alpha
Helix 40
AE4
B
416 429Right-handed alpha
Helix 41
AE5
B
430 449Right-handed alpha
Helix 42
AE6
B
452 466Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 6LFN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 78first strand
Strand 2
A
44 51parallel
Strand 3
A
16 20parallel
Strand 4
A
121 125parallel
Strand 5
A
143 147parallel
Strand 6
A
217 220parallel
Strand 7
A
246 248parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 176first strand
Strand 2
A
185 186anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
338 342first strand
Strand 2
A
303 308parallel
Strand 3
A
274 278parallel
Strand 4
A
356 361parallel
Strand 5
A
378 380parallel
Strand 6
A
400 401parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
72 78first strand
Strand 2
B
44 51parallel
Strand 3
B
16 20parallel
Strand 4
B
121 125parallel
Strand 5
B
143 147parallel
Strand 6
B
217 220parallel
Strand 7
B
246 248parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
175 176first strand
Strand 2
B
185 186anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
339 341first strand
Strand 2
B
303 307parallel
Strand 3
B
274 278parallel
Strand 4
B
356 361parallel
Strand 5
B
378 380parallel
Strand 6
B
400 401parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il