Analysis of interatomic Contacts of Structural Units in PDB entry:
6LFP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6LFP entry

There is 1 chain in PDB entry 6LFP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 63ASN 644
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 6LFP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
63 79Right-handed alpha
Helix 2
AA2
A
84 99Right-handed alpha
Helix 3
AA3
A
103 117Right-handed alpha
Helix 4
AA4
A
122 153Right-handed alpha
Helix 5
AA5
A
159 181Right-handed alpha
Helix 6
AA6
A
182 185Right-handed 310
Helix 7
AA7
A
193 215Right-handed alpha
Helix 8
AA8
A
221 253Right-handed alpha
Helix 9
AA9
A
258 276Right-handed alpha
Helix 10
AB1
A
276 281Right-handed alpha
Helix 11
AB2
A
282 286Right-handed 310
Helix 12
AB3
A
320 326Right-handed alpha
Helix 13
AB4
A
452 456Right-handed alpha
Helix 14
AB5
A
464 469Right-handed alpha
Helix 15
AB6
A
482 485Right-handed 310
Helix 16
AB7
A
515 517Right-handed 310
Helix 17
AB8
A
600 604Right-handed 310
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There are 8 sheets in PDB entry 6LFP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
295 296first strand
Strand 2
A
509 513parallel
Strand 3
A
633 643anti-parallel
Strand 4
A
560 569anti-parallel
Strand 5
A
605 608anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
525 527first strand
Strand 2
A
537 540anti-parallel
Strand 3
A
633 643anti-parallel
Strand 4
A
560 569anti-parallel
Strand 5
A
613 614anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
302 304first strand
Strand 2
A
487 495anti-parallel
Strand 3
A
471 480anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
376 377first strand
Strand 2
A
356 368anti-parallel
Strand 3
A
381 382anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
376 377first strand
Strand 2
A
356 368anti-parallel
Strand 3
A
335 347anti-parallel
Strand 4
A
390 393anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
433 440first strand
Strand 2
A
414 428anti-parallel
Strand 3
A
398 411anti-parallel
Strand 4
A
448 451anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
503 504first strand
Strand 2
A
552 553parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
519 520first strand
Strand 2
A
544 550anti-parallel
Strand 3
A
619 625anti-parallel
Strand 4
A
573 579anti-parallel
Strand 5
A
582 589anti-parallel
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