Analysis of interatomic Contacts of Structural Units in PDB entry:
6LGD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6LGD entry

There are 2 chains in PDB entry 6LGD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 37	ILE 606
B	PRO 37	ILE 606

There are 50 helices in PDB entry 6LGD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	46	50	Right-handed 310
Helix 2	AA2	A	57	62	Right-handed alpha
Helix 3	AA3	A	71	78	Right-handed alpha
Helix 4	AA4	A	79	86	Right-handed alpha
Helix 5	AA5	A	119	133	Right-handed alpha
Helix 6	AA6	A	150	158	Right-handed alpha
Helix 7	AA7	A	222	239	Right-handed alpha
Helix 8	AA8	A	248	252	Right-handed 310
Helix 9	AA9	A	256	260	Right-handed 310
Helix 10	AB1	A	292	313	Right-handed alpha
Helix 11	AB2	A	326	332	Right-handed alpha
Helix 12	AB3	A	349	354	Right-handed alpha
Helix 13	AB4	A	360	375	Right-handed alpha
Helix 14	AB5	A	392	397	Right-handed alpha
Helix 15	AB6	A	398	400	Right-handed 310
Helix 16	AB7	A	401	412	Right-handed alpha
Helix 17	AB8	A	421	425	Right-handed 310
Helix 18	AB9	A	438	445	Right-handed alpha
Helix 19	AC1	A	449	453	Right-handed 310
Helix 20	AC2	A	455	459	Right-handed 310
Helix 21	AC3	A	467	472	Right-handed 310
Helix 22	AC4	A	490	497	Right-handed alpha
Helix 23	AC5	A	500	512	Right-handed alpha
Helix 24	AC6	A	514	520	Right-handed alpha
Helix 25	AC7	A	560	562	Right-handed 310
Helix 26	AC8	B	46	50	Right-handed 310
Helix 27	AC9	B	57	62	Right-handed alpha
Helix 28	AD1	B	71	78	Right-handed alpha
Helix 29	AD2	B	78	86	Right-handed alpha
Helix 30	AD3	B	119	133	Right-handed alpha
Helix 31	AD4	B	150	158	Right-handed alpha
Helix 32	AD5	B	222	240	Right-handed alpha
Helix 33	AD6	B	248	252	Right-handed 310
Helix 34	AD7	B	256	260	Right-handed 310
Helix 35	AD8	B	292	313	Right-handed alpha
Helix 36	AD9	B	326	332	Right-handed alpha
Helix 37	AE1	B	349	354	Right-handed alpha
Helix 38	AE2	B	360	375	Right-handed alpha
Helix 39	AE3	B	392	397	Right-handed alpha
Helix 40	AE4	B	398	400	Right-handed 310
Helix 41	AE5	B	401	412	Right-handed alpha
Helix 42	AE6	B	421	425	Right-handed 310
Helix 43	AE7	B	438	445	Right-handed alpha
Helix 44	AE8	B	449	453	Right-handed 310
Helix 45	AE9	B	455	460	Right-handed 310
Helix 46	AF1	B	467	472	Right-handed 310
Helix 47	AF2	B	490	497	Right-handed alpha
Helix 48	AF3	B	500	512	Right-handed alpha
Helix 49	AF4	B	514	520	Right-handed alpha
Helix 50	AF5	B	560	562	Right-handed 310

There are 12 sheets in PDB entry 6LGD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	345	346	first strand
Strand 2	A	318	321	parallel
Strand 3	A	243	246	parallel
Strand 4	A	136	141	parallel
Strand 5	A	89	92	parallel
Strand 6	A	52	56	parallel
Strand 7	A	415	419	parallel
Strand 8	A	382	384	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	97	first strand
Strand 2	A	109	113	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	145	147	first strand
Strand 2	A	215	217	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	170	first strand
Strand 2	A	205	208	anti-parallel
Strand 3	A	197	200	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	521	526	first strand
Strand 2	A	531	537	anti-parallel
Strand 3	A	543	549	anti-parallel
Strand 4	A	598	603	anti-parallel
Strand 5	A	569	574	anti-parallel
Strand 6	A	585	586	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	555	558	first strand
Strand 2	A	590	593	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	345	346	first strand
Strand 2	B	318	321	parallel
Strand 3	B	243	246	parallel
Strand 4	B	136	141	parallel
Strand 5	B	89	92	parallel
Strand 6	B	52	56	parallel
Strand 7	B	415	419	parallel
Strand 8	B	382	384	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	97	first strand
Strand 2	B	109	113	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	145	147	first strand
Strand 2	B	215	217	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	169	170	first strand
Strand 2	B	205	208	anti-parallel
Strand 3	B	197	200	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	521	526	first strand
Strand 2	B	531	537	anti-parallel
Strand 3	B	543	549	anti-parallel
Strand 4	B	598	603	anti-parallel
Strand 5	B	569	574	anti-parallel
Strand 6	B	585	586	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	555	558	first strand
Strand 2	B	590	593	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6LGD

Analysis of interatomic Contacts of Structural Units in PDB entry:
6LGD