Analysis of interatomic Contacts of Structural Units in PDB entry:
6LGO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6LGO entry

There are 4 chains in PDB entry 6LGO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 9	LEU 395
B	THR 9	LEU 395
C	THR 9	LEU 395
D	THR 9	GLY 196

There are 57 helices in PDB entry 6LGO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	19	Right-handed alpha
Helix 2	AA2	A	59	74	Right-handed alpha
Helix 3	AA3	A	83	96	Right-handed alpha
Helix 4	AA4	A	109	122	Right-handed alpha
Helix 5	AA5	A	134	143	Right-handed alpha
Helix 6	AA6	A	163	174	Right-handed alpha
Helix 7	AA7	A	191	196	Right-handed 310
Helix 8	AA8	A	223	238	Right-handed alpha
Helix 9	AA9	A	242	254	Right-handed alpha
Helix 10	AB1	A	255	275	Right-handed alpha
Helix 11	AB2	A	293	301	Right-handed alpha
Helix 12	AB3	A	314	324	Right-handed alpha
Helix 13	AB4	A	354	362	Right-handed alpha
Helix 14	AB5	A	376	393	Right-handed alpha
Helix 15	AB6	B	12	19	Right-handed alpha
Helix 16	AB7	B	59	74	Right-handed alpha
Helix 17	AB8	B	83	96	Right-handed alpha
Helix 18	AB9	B	109	122	Right-handed alpha
Helix 19	AC1	B	134	143	Right-handed alpha
Helix 20	AC2	B	163	174	Right-handed alpha
Helix 21	AC3	B	191	196	Right-handed 310
Helix 22	AC4	B	223	238	Right-handed alpha
Helix 23	AC5	B	242	254	Right-handed alpha
Helix 24	AC6	B	255	275	Right-handed alpha
Helix 25	AC7	B	293	301	Right-handed alpha
Helix 26	AC8	B	314	324	Right-handed alpha
Helix 27	AC9	B	354	362	Right-handed alpha
Helix 28	AD1	B	376	393	Right-handed alpha
Helix 29	AD2	C	12	20	Right-handed alpha
Helix 30	AD3	C	59	74	Right-handed alpha
Helix 31	AD4	C	83	96	Right-handed alpha
Helix 32	AD5	C	109	122	Right-handed alpha
Helix 33	AD6	C	134	143	Right-handed alpha
Helix 34	AD7	C	163	174	Right-handed alpha
Helix 35	AD8	C	191	196	Right-handed 310
Helix 36	AD9	C	223	237	Right-handed alpha
Helix 37	AE1	C	242	254	Right-handed alpha
Helix 38	AE2	C	255	275	Right-handed alpha
Helix 39	AE3	C	293	301	Right-handed alpha
Helix 40	AE4	C	314	324	Right-handed alpha
Helix 41	AE5	C	344	348	Right-handed 310
Helix 42	AE6	C	354	362	Right-handed alpha
Helix 43	AE7	C	376	393	Right-handed alpha
Helix 44	AE8	D	12	19	Right-handed alpha
Helix 45	AE9	D	59	74	Right-handed alpha
Helix 46	AF1	D	83	96	Right-handed alpha
Helix 47	AF2	D	109	123	Right-handed alpha
Helix 48	AF3	D	134	143	Right-handed alpha
Helix 49	AF4	D	163	174	Right-handed alpha
Helix 50	AF5	D	191	196	Right-handed 310
Helix 51	AF6	D	223	237	Right-handed alpha
Helix 52	AF7	D	242	254	Right-handed alpha
Helix 53	AF8	D	255	275	Right-handed alpha
Helix 54	AF9	D	293	301	Right-handed alpha
Helix 55	AG1	D	314	324	Right-handed alpha
Helix 56	AG2	D	354	362	Right-handed alpha
Helix 57	AG3	D	376	394	Right-handed alpha

There are 8 sheets in PDB entry 6LGO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	77	81	first strand
Strand 2	A	217	221	anti-parallel
Strand 3	A	199	203	anti-parallel
Strand 4	A	177	181	parallel
Strand 5	A	148	152	parallel
Strand 6	A	101	105	parallel
Strand 7	A	126	130	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	280	284	first strand
Strand 2	A	307	312	anti-parallel
Strand 3	A	368	371	anti-parallel
Strand 4	A	341	343	anti-parallel
Strand 5	A	330	331	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	77	81	first strand
Strand 2	B	217	221	anti-parallel
Strand 3	B	199	203	anti-parallel
Strand 4	B	177	181	parallel
Strand 5	B	148	152	parallel
Strand 6	B	101	105	parallel
Strand 7	B	126	130	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	280	284	first strand
Strand 2	B	307	312	anti-parallel
Strand 3	B	367	371	anti-parallel
Strand 4	B	341	343	anti-parallel
Strand 5	B	330	331	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	81	first strand
Strand 2	C	217	221	anti-parallel
Strand 3	C	199	203	anti-parallel
Strand 4	C	177	181	parallel
Strand 5	C	148	152	parallel
Strand 6	C	101	105	parallel
Strand 7	C	126	130	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	280	284	first strand
Strand 2	C	307	312	anti-parallel
Strand 3	C	368	371	anti-parallel
Strand 4	C	341	343	anti-parallel
Strand 5	C	330	331	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	77	81	first strand
Strand 2	D	217	221	anti-parallel
Strand 3	D	199	203	anti-parallel
Strand 4	D	177	181	parallel
Strand 5	D	148	152	parallel
Strand 6	D	101	105	parallel
Strand 7	D	126	130	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	280	284	first strand
Strand 2	D	307	312	anti-parallel
Strand 3	D	368	371	anti-parallel
Strand 4	D	341	343	anti-parallel
Strand 5	D	330	331	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6LGO

Analysis of interatomic Contacts of Structural Units in PDB entry:
6LGO