Analysis of interatomic Contacts of Structural Units in PDB entry:
6LGQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6LGQ entry

There are 2 chains in PDB entry 6LGQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 SER -3PHE 890
D
 MET 1LEU 225
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 6LGQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
661 675Right-handed alpha
Helix 2
AA2
C
675 696Right-handed alpha
Helix 3
AA3
C
700 727Right-handed alpha
Helix 4
AA4
C
741 753Right-handed alpha
Helix 5
AA5
C
774 793Right-handed alpha
Helix 6
AA6
C
848 859Right-handed alpha
Helix 7
AA7
D
10 23Right-handed alpha
Helix 8
AA8
D
33 44Right-handed alpha
Helix 9
AA9
D
60 69Right-handed alpha
Helix 10
AB1
D
84 93Right-handed alpha
Helix 11
AB2
D
106 114Right-handed alpha
Helix 12
AB3
D
115 120Right-handed 310
Helix 13
AB4
D
153 166Right-handed alpha
Helix 14
AB5
D
173 179Right-handed alpha
Helix 15
AB6
D
189 204Right-handed alpha
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There are 5 sheets in PDB entry 6LGQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
737 740first strand
Strand 2
C
770 773anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
761 763first strand
Strand 2
C
799 805parallel
Strand 3
C
809 816anti-parallel
Strand 4
C
873 880anti-parallel
Strand 5
C
862 867anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
27 31first strand
Strand 2
D
3 7parallel
Strand 3
D
48 52parallel
Strand 4
D
75 79parallel
Strand 5
D
97 100parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
130 131first strand
Strand 2
D
134 137anti-parallel
Strand 3
D
142 145anti-parallel
Strand 4
D
149 150anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
170 172first strand
Strand 2
D
220 223anti-parallel
Strand 3
D
213 216anti-parallel
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