Analysis of interatomic Contacts of Structural Units in PDB entry:
6LGW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6LGW entry

There are 4 chains in PDB entry 6LGW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 1LEU 224
E
 LYS 1LEU 395
C
 GLU 1LEU 224
F
 LYS 1HIS 397
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 6LGW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
28 32Right-handed 310
Helix 2
AA2
A
62 65Right-handed 310
Helix 3
AA3
A
87 91Right-handed 310
Helix 4
AA4
A
199 203Right-handed 310
Helix 5
AA5
E
18 22Right-handed 310
Helix 6
AA6
E
90 104Right-handed alpha
Helix 7
AA7
E
154 156Right-handed 310
Helix 8
AA8
E
262 292Right-handed alpha
Helix 9
AA9
E
297 303Right-handed alpha
Helix 10
AB1
E
373 382Right-handed alpha
Helix 11
AB2
C
28 32Right-handed 310
Helix 12
AB3
C
87 91Right-handed 310
Helix 13
AB4
C
199 203Right-handed 310
Helix 14
AB5
F
18 22Right-handed 310
Helix 15
AB6
F
90 103Right-handed alpha
Helix 16
AB7
F
105 111Right-handed alpha
Helix 17
AB8
F
262 292Right-handed alpha
Helix 18
AB9
F
297 303Right-handed alpha
Helix 19
AC1
F
334 339Right-handed alpha
Helix 20
AC2
F
373 380Right-handed alpha
Helix 21
AC3
F
380 387Right-handed alpha
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There are 25 sheets in PDB entry 6LGW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 6first strand
Strand 2
A
17 25anti-parallel
Strand 3
A
78 84anti-parallel
Strand 4
A
68 73anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 12first strand
Strand 2
A
113 117parallel
Strand 3
A
92 99anti-parallel
Strand 4
A
34 39anti-parallel
Strand 5
A
45 51anti-parallel
Strand 6
A
58 60anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 12first strand
Strand 2
A
113 117parallel
Strand 3
A
92 99anti-parallel
Strand 4
A
106 109anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 127first strand
Strand 2
A
139 145anti-parallel
Strand 3
A
190 195anti-parallel
Strand 4
A
182 187anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 168first strand
Strand 2
A
153 158anti-parallel
Strand 3
A
205 210anti-parallel
Strand 4
A
217 218anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 168first strand
Strand 2
A
153 158anti-parallel
Strand 3
A
205 210anti-parallel
Strand 4
A
222 223anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
5 11first strand
Strand 2
E
321 332anti-parallel
Strand 3
E
15 16anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
5 11first strand
Strand 2
E
321 332anti-parallel
Strand 3
E
310 318anti-parallel
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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
216 218first strand
Strand 2
E
206 210anti-parallel
Strand 3
E
192 201anti-parallel
Strand 4
E
37 46anti-parallel
Strand 5
F
127 135parallel
Strand 6
F
58 69anti-parallel
Strand 7
F
81 87anti-parallel
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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
223 227first strand
Strand 2
E
230 234anti-parallel
Strand 3
E
240 242anti-parallel
Strand 4
E
37 46anti-parallel
Strand 5
F
127 135parallel
Strand 6
F
58 69anti-parallel
Strand 7
F
176 180anti-parallel
Strand 8
F
169 170anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
81 87first strand
Strand 2
E
55 69anti-parallel
Strand 3
E
127 142anti-parallel
Strand 4
E
149 150anti-parallel
Strand 5
E
158 159anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
81 87first strand
Strand 2
E
55 69anti-parallel
Strand 3
E
176 180anti-parallel
Strand 4
E
169 170anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
346 347first strand
Strand 2
E
350 351anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 6first strand
Strand 2
C
18 25anti-parallel
Strand 3
C
78 83anti-parallel
Strand 4
C
68 73anti-parallel
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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
9 12first strand
Strand 2
C
113 117parallel
Strand 3
C
92 99anti-parallel
Strand 4
C
34 39anti-parallel
Strand 5
C
45 51anti-parallel
Strand 6
C
58 60anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
9 12first strand
Strand 2
C
113 117parallel
Strand 3
C
92 99anti-parallel
Strand 4
C
106 109anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
124 126first strand
Strand 2
C
139 145anti-parallel
Strand 3
C
190 195anti-parallel
Strand 4
C
182 186anti-parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
164 168first strand
Strand 2
C
153 158anti-parallel
Strand 3
C
205 210anti-parallel
Strand 4
C
217 218anti-parallel
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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
164 168first strand
Strand 2
C
153 158anti-parallel
Strand 3
C
205 210anti-parallel
Strand 4
C
222 223anti-parallel
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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
5 11first strand
Strand 2
F
321 332anti-parallel
Strand 3
F
15 16anti-parallel
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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
5 11first strand
Strand 2
F
321 332anti-parallel
Strand 3
F
310 318anti-parallel
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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
216 218first strand
Strand 2
F
208 210anti-parallel
Strand 3
F
192 200anti-parallel
Strand 4
F
38 46anti-parallel
Strand 5
F
240 242anti-parallel
Strand 6
F
230 234anti-parallel
Strand 7
F
223 227anti-parallel
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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
55 56first strand
Strand 2
F
140 143anti-parallel
Strand 3
F
148 150anti-parallel
Strand 4
F
158 159anti-parallel
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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
346 347first strand
Strand 2
F
350 351anti-parallel
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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
364 365first strand
Strand 2
F
371 372anti-parallel
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