Analysis of interatomic Contacts of Structural Units in PDB entry:
6LGX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6LGX entry

There are 2 chains in PDB entry 6LGX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 1	HIS 419
B	PHE 2	GLU 408

There are 13 helices in PDB entry 6LGX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	18	22	Right-handed 310
Helix 2	AA2	A	90	103	Right-handed alpha
Helix 3	AA3	A	273	294	Right-handed alpha
Helix 4	AA4	A	297	303	Right-handed alpha
Helix 5	AA5	A	334	338	Right-handed 310
Helix 6	AA6	A	373	389	Right-handed alpha
Helix 7	AA7	A	397	401	Right-handed 310
Helix 8	AA8	B	18	22	Right-handed 310
Helix 9	AA9	B	90	100	Right-handed alpha
Helix 10	AB1	B	279	294	Right-handed alpha
Helix 11	AB2	B	299	303	Right-handed 310
Helix 12	AB3	B	334	338	Right-handed 310
Helix 13	AB4	B	373	389	Right-handed alpha

There are 18 sheets in PDB entry 6LGX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	11	first strand
Strand 2	A	321	332	anti-parallel
Strand 3	A	15	16	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	11	first strand
Strand 2	A	321	332	anti-parallel
Strand 3	A	310	318	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	46	first strand
Strand 2	A	192	200	anti-parallel
Strand 3	A	208	210	anti-parallel
Strand 4	A	216	218	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	87	first strand
Strand 2	A	58	68	anti-parallel
Strand 3	A	127	135	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	87	first strand
Strand 2	A	58	68	anti-parallel
Strand 3	A	176	180	anti-parallel
Strand 4	A	169	170	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	141	143	first strand
Strand 2	A	148	150	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	223	227	first strand
Strand 2	A	230	234	anti-parallel
Strand 3	A	240	241	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	346	347	first strand
Strand 2	A	350	351	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	358	360	first strand
Strand 2	A	363	365	anti-parallel
Strand 3	A	371	372	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	11	first strand
Strand 2	B	321	331	anti-parallel
Strand 3	B	15	16	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	11	first strand
Strand 2	B	321	331	anti-parallel
Strand 3	B	310	318	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	40	46	first strand
Strand 2	B	192	198	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	56	first strand
Strand 2	B	140	142	anti-parallel
Strand 3	B	149	150	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	85	86	first strand
Strand 2	B	58	65	anti-parallel
Strand 3	B	131	135	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	85	86	first strand
Strand 2	B	58	65	anti-parallel
Strand 3	B	176	180	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	208	210	first strand
Strand 2	B	216	218	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	223	227	first strand
Strand 2	B	230	234	anti-parallel
Strand 3	B	240	241	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	364	365	first strand
Strand 2	B	371	372	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6LGX

Analysis of interatomic Contacts of Structural Units in PDB entry:
6LGX