Analysis of interatomic Contacts of Structural Units in PDB entry:
6LHF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6LHF entry

There are 10 chains in PDB entry 6LHF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 4	TRP 273
B	LEU 5	GLU 100
C	ARG 1	TYR 8
G	THR 8	PHE 119
H	THR 8	PHE 119
D	GLU 4	TRP 273
E	LEU 5	GLU 100
F	ARG 1	TYR 8
I	THR 8	PHE 119
J	THR 8	PHE 119

There are 18 helices in PDB entry 6LHF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	50	55	Right-handed alpha
Helix 2	AA2	A	58	87	Right-handed alpha
Helix 3	AA3	A	139	148	Right-handed alpha
Helix 4	AA4	A	151	162	Right-handed alpha
Helix 5	AA5	A	162	175	Right-handed alpha
Helix 6	AA6	A	175	180	Right-handed alpha
Helix 7	AA7	A	252	254	Right-handed 310
Helix 8	AA8	G	92	96	Right-handed 310
Helix 9	AA9	H	92	96	Right-handed 310
Helix 10	AB1	D	50	55	Right-handed alpha
Helix 11	AB2	D	58	87	Right-handed alpha
Helix 12	AB3	D	139	148	Right-handed alpha
Helix 13	AB4	D	151	162	Right-handed alpha
Helix 14	AB5	D	162	175	Right-handed alpha
Helix 15	AB6	D	175	180	Right-handed alpha
Helix 16	AB7	D	252	254	Right-handed 310
Helix 17	AB8	I	92	96	Right-handed 310
Helix 18	AB9	J	92	96	Right-handed 310

There are 24 sheets in PDB entry 6LHF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	48	first strand
Strand 2	A	34	40	anti-parallel
Strand 3	A	25	31	anti-parallel
Strand 4	A	6	15	anti-parallel
Strand 5	A	95	104	anti-parallel
Strand 6	A	110	118	anti-parallel
Strand 7	A	121	127	anti-parallel
Strand 8	A	132	135	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	186	193	first strand
Strand 2	A	198	207	anti-parallel
Strand 3	A	240	248	anti-parallel
Strand 4	A	227	234	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	221	222	first strand
Strand 2	A	212	218	anti-parallel
Strand 3	A	256	262	anti-parallel
Strand 4	A	269	272	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	13	first strand
Strand 2	B	23	32	anti-parallel
Strand 3	B	64	72	anti-parallel
Strand 4	B	52	53	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	13	first strand
Strand 2	B	23	32	anti-parallel
Strand 3	B	64	72	anti-parallel
Strand 4	B	57	58	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	47	first strand
Strand 2	B	38	43	anti-parallel
Strand 3	B	80	85	anti-parallel
Strand 4	B	93	96	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	11	13	first strand
Strand 2	G	25	31	anti-parallel
Strand 3	G	83	91	anti-parallel
Strand 4	G	75	80	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	63	64	first strand
Strand 2	G	51	57	anti-parallel
Strand 3	G	40	45	anti-parallel
Strand 4	G	97	105	anti-parallel
Strand 5	G	108	111	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	63	64	first strand
Strand 2	G	51	57	anti-parallel
Strand 3	G	40	45	anti-parallel
Strand 4	G	97	105	anti-parallel
Strand 5	G	115	117	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	13	first strand
Strand 2	H	27	32	anti-parallel
Strand 3	H	83	88	anti-parallel
Strand 4	H	75	80	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	63	64	first strand
Strand 2	H	51	57	anti-parallel
Strand 3	H	40	45	anti-parallel
Strand 4	H	97	105	anti-parallel
Strand 5	H	108	111	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	63	64	first strand
Strand 2	H	51	57	anti-parallel
Strand 3	H	40	45	anti-parallel
Strand 4	H	97	105	anti-parallel
Strand 5	H	115	117	anti-parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	47	48	first strand
Strand 2	D	34	40	anti-parallel
Strand 3	D	25	31	anti-parallel
Strand 4	D	6	15	anti-parallel
Strand 5	D	95	104	anti-parallel
Strand 6	D	110	118	anti-parallel
Strand 7	D	121	127	anti-parallel
Strand 8	D	132	135	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	186	193	first strand
Strand 2	D	198	207	anti-parallel
Strand 3	D	240	248	anti-parallel
Strand 4	D	227	234	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	221	222	first strand
Strand 2	D	212	218	anti-parallel
Strand 3	D	256	262	anti-parallel
Strand 4	D	269	271	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	8	13	first strand
Strand 2	E	23	32	anti-parallel
Strand 3	E	64	72	anti-parallel
Strand 4	E	51	53	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	8	13	first strand
Strand 2	E	23	32	anti-parallel
Strand 3	E	64	72	anti-parallel
Strand 4	E	57	58	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	46	47	first strand
Strand 2	E	38	43	anti-parallel
Strand 3	E	80	85	anti-parallel
Strand 4	E	93	96	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	11	13	first strand
Strand 2	I	25	31	anti-parallel
Strand 3	I	83	91	anti-parallel
Strand 4	I	75	80	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	63	64	first strand
Strand 2	I	51	57	anti-parallel
Strand 3	I	40	45	anti-parallel
Strand 4	I	97	105	anti-parallel
Strand 5	I	108	111	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	63	64	first strand
Strand 2	I	51	57	anti-parallel
Strand 3	I	40	45	anti-parallel
Strand 4	I	97	105	anti-parallel
Strand 5	I	115	117	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	13	first strand
Strand 2	J	27	32	anti-parallel
Strand 3	J	83	88	anti-parallel
Strand 4	J	75	80	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	63	64	first strand
Strand 2	J	51	57	anti-parallel
Strand 3	J	40	45	anti-parallel
Strand 4	J	97	105	anti-parallel
Strand 5	J	108	111	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	63	64	first strand
Strand 2	J	51	57	anti-parallel
Strand 3	J	40	45	anti-parallel
Strand 4	J	97	105	anti-parallel
Strand 5	J	115	117	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6LHF

Analysis of interatomic Contacts of Structural Units in PDB entry:
6LHF