Analysis of interatomic Contacts of Structural Units in PDB entry:
6LHG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6LHG entry

There are 10 chains in PDB entry 6LHG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 1	LEU 272
B	ASP 1	GLU 97
C	ILE 1	GLU 8
G	THR 8	PHE 119
H	THR 8	PHE 119
D	GLU 1	LEU 272
E	ASP 1	GLU 97
F	ILE 1	GLU 8
I	THR 8	PHE 119
J	THR 8	PHE 119

There are 20 helices in PDB entry 6LHG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	47	53	Right-handed alpha
Helix 2	AA2	A	55	84	Right-handed alpha
Helix 3	AA3	A	134	136	Right-handed 310
Helix 4	AA4	A	137	147	Right-handed alpha
Helix 5	AA5	A	148	159	Right-handed alpha
Helix 6	AA6	A	159	172	Right-handed alpha
Helix 7	AA7	A	172	177	Right-handed alpha
Helix 8	AA8	A	249	251	Right-handed 310
Helix 9	AA9	G	65	69	Right-handed 310
Helix 10	AB1	G	92	96	Right-handed 310
Helix 11	AB2	D	47	52	Right-handed alpha
Helix 12	AB3	D	55	84	Right-handed alpha
Helix 13	AB4	D	134	136	Right-handed 310
Helix 14	AB5	D	137	147	Right-handed alpha
Helix 15	AB6	D	148	159	Right-handed alpha
Helix 16	AB7	D	159	172	Right-handed alpha
Helix 17	AB8	D	172	177	Right-handed alpha
Helix 18	AB9	D	249	251	Right-handed 310
Helix 19	AC1	I	92	96	Right-handed 310
Helix 20	AC2	J	70	74	Right-handed alpha

There are 26 sheets in PDB entry 6LHG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	45	first strand
Strand 2	A	31	37	anti-parallel
Strand 3	A	22	28	anti-parallel
Strand 4	A	3	12	anti-parallel
Strand 5	A	92	101	anti-parallel
Strand 6	A	107	115	anti-parallel
Strand 7	A	118	123	anti-parallel
Strand 8	A	130	132	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	183	191	first strand
Strand 2	A	194	204	anti-parallel
Strand 3	A	237	245	anti-parallel
Strand 4	A	225	226	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	183	191	first strand
Strand 2	A	194	204	anti-parallel
Strand 3	A	237	245	anti-parallel
Strand 4	A	230	231	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	218	219	first strand
Strand 2	A	209	215	anti-parallel
Strand 3	A	253	259	anti-parallel
Strand 4	A	266	268	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	5	10	first strand
Strand 2	B	20	29	anti-parallel
Strand 3	B	61	69	anti-parallel
Strand 4	B	48	50	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	5	10	first strand
Strand 2	B	20	29	anti-parallel
Strand 3	B	61	69	anti-parallel
Strand 4	B	54	55	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	43	44	first strand
Strand 2	B	35	40	anti-parallel
Strand 3	B	77	82	anti-parallel
Strand 4	B	90	93	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	27	31	first strand
Strand 2	G	83	88	anti-parallel
Strand 3	G	75	80	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	63	64	first strand
Strand 2	G	51	57	anti-parallel
Strand 3	G	40	45	anti-parallel
Strand 4	G	97	105	anti-parallel
Strand 5	G	108	111	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	63	64	first strand
Strand 2	G	51	57	anti-parallel
Strand 3	G	40	45	anti-parallel
Strand 4	G	97	105	anti-parallel
Strand 5	G	115	117	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	13	first strand
Strand 2	H	27	32	anti-parallel
Strand 3	H	83	88	anti-parallel
Strand 4	H	75	80	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	63	64	first strand
Strand 2	H	51	57	anti-parallel
Strand 3	H	40	45	anti-parallel
Strand 4	H	97	105	anti-parallel
Strand 5	H	108	111	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	63	64	first strand
Strand 2	H	51	57	anti-parallel
Strand 3	H	40	45	anti-parallel
Strand 4	H	97	105	anti-parallel
Strand 5	H	115	117	anti-parallel

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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	44	45	first strand
Strand 2	D	31	37	anti-parallel
Strand 3	D	22	28	anti-parallel
Strand 4	D	3	12	anti-parallel
Strand 5	D	92	101	anti-parallel
Strand 6	D	107	115	anti-parallel
Strand 7	D	118	123	anti-parallel
Strand 8	D	130	132	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	183	191	first strand
Strand 2	D	194	204	anti-parallel
Strand 3	D	237	245	anti-parallel
Strand 4	D	225	226	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	183	191	first strand
Strand 2	D	194	204	anti-parallel
Strand 3	D	237	245	anti-parallel
Strand 4	D	230	231	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	218	219	first strand
Strand 2	D	209	215	anti-parallel
Strand 3	D	253	259	anti-parallel
Strand 4	D	266	268	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	5	10	first strand
Strand 2	E	20	29	anti-parallel
Strand 3	E	61	69	anti-parallel
Strand 4	E	48	50	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	5	10	first strand
Strand 2	E	20	29	anti-parallel
Strand 3	E	61	69	anti-parallel
Strand 4	E	54	55	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	43	44	first strand
Strand 2	E	34	40	anti-parallel
Strand 3	E	77	83	anti-parallel
Strand 4	E	90	93	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	13	first strand
Strand 2	I	27	32	anti-parallel
Strand 3	I	83	88	anti-parallel
Strand 4	I	75	80	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	63	64	first strand
Strand 2	I	51	57	anti-parallel
Strand 3	I	40	45	anti-parallel
Strand 4	I	97	105	anti-parallel
Strand 5	I	108	111	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	63	64	first strand
Strand 2	I	51	57	anti-parallel
Strand 3	I	40	45	anti-parallel
Strand 4	I	97	105	anti-parallel
Strand 5	I	115	117	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	13	first strand
Strand 2	J	27	32	anti-parallel
Strand 3	J	83	88	anti-parallel
Strand 4	J	75	80	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	63	64	first strand
Strand 2	J	51	57	anti-parallel
Strand 3	J	40	45	anti-parallel
Strand 4	J	97	104	anti-parallel
Strand 5	J	109	111	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	63	64	first strand
Strand 2	J	51	57	anti-parallel
Strand 3	J	40	45	anti-parallel
Strand 4	J	97	104	anti-parallel
Strand 5	J	115	117	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6LHG

Analysis of interatomic Contacts of Structural Units in PDB entry:
6LHG