Analysis of interatomic Contacts of Structural Units in PDB entry:
6LHM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6LHM entry

There are 5 chains in PDB entry 6LHM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1MET 271
B
 VAL 3MET 271
C
 VAL 3MET 271
D
 MET 1ASP 273
E
 GLN 10ASP 273
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 67 helices in PDB entry 6LHM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 23Right-handed alpha
Helix 2
AA2
A
39 49Right-handed alpha
Helix 3
AA3
A
56 61Right-handed alpha
Helix 4
AA4
A
74 83Right-handed alpha
Helix 5
AA5
A
100 112Right-handed alpha
Helix 6
AA6
A
142 155Right-handed alpha
Helix 7
AA7
A
163 165Right-handed 310
Helix 8
AA8
A
166 175Right-handed alpha
Helix 9
AA9
A
176 196Right-handed alpha
Helix 10
AB1
A
198 220Right-handed alpha
Helix 11
AB2
A
223 232Right-handed alpha
Helix 12
AB3
A
236 248Right-handed alpha
Helix 13
AB4
A
249 270Right-handed alpha
Helix 14
AB5
B
9 23Right-handed alpha
Helix 15
AB6
B
39 46Right-handed alpha
Helix 16
AB7
B
47 49Right-handed 310
Helix 17
AB8
B
74 83Right-handed alpha
Helix 18
AB9
B
100 112Right-handed alpha
Helix 19
AC1
B
143 154Right-handed alpha
Helix 20
AC2
B
163 165Right-handed 310
Helix 21
AC3
B
166 174Right-handed alpha
Helix 22
AC4
B
176 195Right-handed alpha
Helix 23
AC5
B
198 220Right-handed alpha
Helix 24
AC6
B
223 232Right-handed alpha
Helix 25
AC7
B
236 248Right-handed alpha
Helix 26
AC8
B
249 270Right-handed alpha
Helix 27
AC9
C
13 21Right-handed alpha
Helix 28
AD1
C
41 46Right-handed alpha
Helix 29
AD2
C
55 60Right-handed alpha
Helix 30
AD3
C
74 83Right-handed alpha
Helix 31
AD4
C
84 86Right-handed 310
Helix 32
AD5
C
100 112Right-handed alpha
Helix 33
AD6
C
145 154Right-handed alpha
Helix 34
AD7
C
166 174Right-handed alpha
Helix 35
AD8
C
176 195Right-handed alpha
Helix 36
AD9
C
198 220Right-handed alpha
Helix 37
AE1
C
223 232Right-handed alpha
Helix 38
AE2
C
236 247Right-handed alpha
Helix 39
AE3
C
249 270Right-handed alpha
Helix 40
AE4
D
9 23Right-handed alpha
Helix 41
AE5
D
26 30Right-handed 310
Helix 42
AE6
D
39 48Right-handed alpha
Helix 43
AE7
D
57 63Right-handed alpha
Helix 44
AE8
D
73 83Right-handed alpha
Helix 45
AE9
D
100 109Right-handed alpha
Helix 46
AF1
D
124 129Right-handed 310
Helix 47
AF2
D
142 144Right-handed 310
Helix 48
AF3
D
145 156Right-handed alpha
Helix 49
AF4
D
163 165Right-handed 310
Helix 50
AF5
D
166 172Right-handed alpha
Helix 51
AF6
D
176 195Right-handed alpha
Helix 52
AF7
D
198 220Right-handed alpha
Helix 53
AF8
D
225 232Right-handed alpha
Helix 54
AF9
D
236 248Right-handed alpha
Helix 55
AG1
D
249 273Right-handed alpha
Helix 56
AG2
E
11 21Right-handed alpha
Helix 57
AG3
E
40 47Right-handed alpha
Helix 58
AG4
E
74 82Right-handed alpha
Helix 59
AG5
E
143 154Right-handed alpha
Helix 60
AG6
E
163 165Right-handed 310
Helix 61
AG7
E
166 174Right-handed alpha
Helix 62
AG8
E
176 193Right-handed alpha
Helix 63
AG9
E
194 196Right-handed 310
Helix 64
AH1
E
198 220Right-handed alpha
Helix 65
AH2
E
223 232Right-handed alpha
Helix 66
AH3
E
236 248Right-handed alpha
Helix 67
AH4
E
249 273Right-handed alpha
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There are 7 sheets in PDB entry 6LHM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 31first strand
Strand 2
A
3 5parallel
Strand 3
A
65 68parallel
Strand 4
A
91 94parallel
Strand 5
A
116 120parallel
Strand 6
A
131 137anti-parallel
Strand 7
A
157 161parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 53first strand
Strand 2
B
31 33parallel
Strand 3
B
4 6parallel
Strand 4
B
65 68parallel
Strand 5
B
91 94parallel
Strand 6
B
117 122parallel
Strand 7
B
132 137anti-parallel
Strand 8
B
158 161parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
31 32first strand
Strand 2
C
4 5parallel
Strand 3
C
65 68parallel
Strand 4
C
91 94parallel
Strand 5
C
117 122parallel
Strand 6
C
131 135anti-parallel
Strand 7
C
157 161parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3 5first strand
Strand 2
D
65 68parallel
Strand 3
D
92 94parallel
Strand 4
D
117 122parallel
Strand 5
D
131 135anti-parallel
Strand 6
D
157 161parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
32 33first strand
Strand 2
D
52 53parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
31 33first strand
Strand 2
E
51 53parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
92 95first strand
Strand 2
E
117 122parallel
Strand 3
E
131 135anti-parallel
Strand 4
E
157 161parallel
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