Analysis of interatomic Contacts of Structural Units in PDB entry:
6LHT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6LHT entry

There are 7 chains in PDB entry 6LHT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
L	ASP 1	LYS 113
H	GLU 1	ALA 120
A	ASN 71	THR 295
C	ASN 71	THR 295
D	ASN 71	LEU 297
E	ASN 71	LEU 297
B	ASN 71	LEU 297

There are 25 helices in PDB entry 6LHT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	79	85	Right-handed alpha
Helix 2	AA2	A	116	124	Right-handed alpha
Helix 3	AA3	A	168	173	Right-handed 310
Helix 4	AA4	A	215	219	Right-handed 310
Helix 5	AA5	A	225	229	Right-handed 310
Helix 6	AA6	C	79	85	Right-handed alpha
Helix 7	AA7	C	116	124	Right-handed alpha
Helix 8	AA8	C	168	173	Right-handed 310
Helix 9	AA9	C	215	219	Right-handed 310
Helix 10	AB1	C	225	229	Right-handed 310
Helix 11	AB2	D	79	85	Right-handed alpha
Helix 12	AB3	D	116	124	Right-handed alpha
Helix 13	AB4	D	168	173	Right-handed 310
Helix 14	AB5	D	215	219	Right-handed 310
Helix 15	AB6	D	225	229	Right-handed 310
Helix 16	AB7	E	79	85	Right-handed alpha
Helix 17	AB8	E	116	124	Right-handed alpha
Helix 18	AB9	E	168	173	Right-handed 310
Helix 19	AC1	E	215	219	Right-handed 310
Helix 20	AC2	E	225	229	Right-handed 310
Helix 21	AC3	B	79	85	Right-handed alpha
Helix 22	AC4	B	116	124	Right-handed alpha
Helix 23	AC5	B	168	173	Right-handed 310
Helix 24	AC6	B	215	219	Right-handed 310
Helix 25	AC7	B	225	229	Right-handed 310

There are 18 sheets in PDB entry 6LHT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	36	40	first strand
Strand 2	H	44	48	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	92	94	first strand
Strand 2	H	114	116	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	97	98	first strand
Strand 2	H	109	110	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	95	first strand
Strand 2	A	247	263	anti-parallel
Strand 3	A	126	140	anti-parallel
Strand 4	A	188	190	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	95	first strand
Strand 2	A	247	263	anti-parallel
Strand 3	A	126	140	anti-parallel
Strand 4	A	201	202	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	106	110	first strand
Strand 2	A	232	237	anti-parallel
Strand 3	A	150	156	anti-parallel
Strand 4	A	178	182	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	88	95	first strand
Strand 2	C	247	263	anti-parallel
Strand 3	C	126	140	anti-parallel
Strand 4	C	188	190	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	88	95	first strand
Strand 2	C	247	263	anti-parallel
Strand 3	C	126	140	anti-parallel
Strand 4	C	201	202	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	106	110	first strand
Strand 2	C	232	237	anti-parallel
Strand 3	C	150	156	anti-parallel
Strand 4	C	178	182	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	88	95	first strand
Strand 2	D	247	263	anti-parallel
Strand 3	D	126	140	anti-parallel
Strand 4	D	188	190	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	88	95	first strand
Strand 2	D	247	263	anti-parallel
Strand 3	D	126	140	anti-parallel
Strand 4	D	201	202	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	106	110	first strand
Strand 2	D	232	237	anti-parallel
Strand 3	D	150	156	anti-parallel
Strand 4	D	178	182	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	88	95	first strand
Strand 2	E	247	263	anti-parallel
Strand 3	E	126	140	anti-parallel
Strand 4	E	188	190	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	88	95	first strand
Strand 2	E	247	263	anti-parallel
Strand 3	E	126	140	anti-parallel
Strand 4	E	201	202	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	106	110	first strand
Strand 2	E	232	237	anti-parallel
Strand 3	E	150	156	anti-parallel
Strand 4	E	178	182	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	88	95	first strand
Strand 2	B	247	263	anti-parallel
Strand 3	B	126	140	anti-parallel
Strand 4	B	188	190	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	88	95	first strand
Strand 2	B	247	263	anti-parallel
Strand 3	B	126	140	anti-parallel
Strand 4	B	201	202	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	106	110	first strand
Strand 2	B	232	237	anti-parallel
Strand 3	B	150	156	anti-parallel
Strand 4	B	178	182	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6LHT

Analysis of interatomic Contacts of Structural Units in PDB entry:
6LHT