Analysis of interatomic Contacts of Structural Units in PDB entry:
6LI0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6LI0 entry

There is 1 chain in PDB entry 6LI0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 21SER 338
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 6LI0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
40 67Right-handed alpha
Helix 2
AA2
A
75 104Right-handed alpha
Helix 3
AA3
A
110 145Right-handed alpha
Helix 4
AA4
A
145 153Right-handed alpha
Helix 5
AA5
A
154 173Right-handed alpha
Helix 6
AA6
A
174 178Right-handed 310
Helix 7
AA7
A
185 189Right-handed 310
Helix 8
AA8
A
190 197Right-handed alpha
Helix 9
AA9
A
200 211Right-handed alpha
Helix 10
AB1
A
211 227Right-handed alpha
Helix 11
AB2
A
1013 1029Right-handed alpha
Helix 12
AB3
A
1039 1041Right-handed 310
Helix 13
AB4
A
1071 1077Right-handed alpha
Helix 14
AB5
A
1078 1081Right-handed 310
Helix 15
AB6
A
1102 1115Right-handed alpha
Helix 16
AB7
A
1129 1132Right-handed 310
Helix 17
AB8
A
1133 1145Right-handed alpha
Helix 18
AB9
A
1146 290Right-handed alpha
Helix 19
AC1
A
295 308Right-handed alpha
Helix 20
AC2
A
308 321Right-handed alpha
Helix 21
AC3
A
321 338Right-handed alpha
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There are 4 sheets in PDB entry 6LI0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 26first strand
Strand 2
A
33 34anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1032 1037first strand
Strand 2
A
1003 1009parallel
Strand 3
A
1052 1057parallel
Strand 4
A
1087 1094parallel
Strand 5
A
1118 1119parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1032 1037first strand
Strand 2
A
1003 1009parallel
Strand 3
A
1052 1057parallel
Strand 4
A
1087 1094parallel
Strand 5
A
1124 1127parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1059 1060first strand
Strand 2
A
1066 1067anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il