Analysis of interatomic Contacts of Structural Units in PDB entry:
6LI9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6LI9 entry

There are 4 chains in PDB entry 6LI9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 63	CYS 685
B	LEU 30	GLU 487
C	GLN 63	CYS 685
D	LEU 30	GLU 487

There are102 helices in PDB entry 6LI9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	69	74	Right-handed alpha
Helix 2	AA2	A	79	111	Right-handed alpha
Helix 3	AA3	A	116	121	Right-handed alpha
Helix 4	AA4	A	127	131	Right-handed 310
Helix 5	AA5	A	141	147	Right-handed alpha
Helix 6	AA6	A	148	155	Right-handed alpha
Helix 7	AA7	A	189	203	Right-handed alpha
Helix 8	AA8	A	220	227	Right-handed alpha
Helix 9	AA9	A	230	236	Right-handed 310
Helix 10	AB1	A	289	306	Right-handed alpha
Helix 11	AB2	A	315	319	Right-handed 310
Helix 12	AB3	A	342	344	Right-handed 310
Helix 13	AB4	A	356	370	Right-handed alpha
Helix 14	AB5	A	389	394	Right-handed alpha
Helix 15	AB6	A	395	398	Right-handed 310
Helix 16	AB7	A	420	435	Right-handed alpha
Helix 17	AB8	A	452	457	Right-handed alpha
Helix 18	AB9	A	458	460	Right-handed 310
Helix 19	AC1	A	461	472	Right-handed alpha
Helix 20	AC2	A	502	506	Right-handed 310
Helix 21	AC3	A	514	519	Right-handed 310
Helix 22	AC4	A	530	535	Right-handed 310
Helix 23	AC5	A	537	542	Right-handed alpha
Helix 24	AC6	A	547	562	Right-handed alpha
Helix 25	AC7	A	562	567	Right-handed alpha
Helix 26	AC8	A	606	610	Right-handed 310
Helix 27	AC9	A	625	629	Right-handed 310
Helix 28	AD1	A	662	664	Right-handed 310
Helix 29	AD2	B	32	44	Right-handed alpha
Helix 30	AD3	B	51	59	Right-handed alpha
Helix 31	AD4	B	61	90	Right-handed alpha
Helix 32	AD5	B	96	104	Right-handed alpha
Helix 33	AD6	B	105	119	Right-handed alpha
Helix 34	AD7	B	119	138	Right-handed alpha
Helix 35	AD8	B	139	141	Right-handed 310
Helix 36	AD9	B	147	166	Right-handed alpha
Helix 37	AE1	B	171	176	Right-handed alpha
Helix 38	AE2	B	176	201	Right-handed alpha
Helix 39	AE3	B	204	208	Right-handed 310
Helix 40	AE4	B	219	231	Right-handed alpha
Helix 41	AE5	B	235	239	Right-handed 310
Helix 42	AE6	B	250	275	Right-handed alpha
Helix 43	AE7	B	279	285	Right-handed alpha
Helix 44	AE8	B	288	297	Right-handed alpha
Helix 45	AE9	B	303	321	Right-handed alpha
Helix 46	AF1	B	325	334	Right-handed alpha
Helix 47	AF2	B	351	366	Right-handed alpha
Helix 48	AF3	B	373	396	Right-handed alpha
Helix 49	AF4	B	411	432	Right-handed alpha
Helix 50	AF5	B	435	455	Right-handed alpha
Helix 51	AF6	B	462	478	Right-handed alpha
Helix 52	AF7	C	69	74	Right-handed alpha
Helix 53	AF8	C	79	111	Right-handed alpha
Helix 54	AF9	C	116	121	Right-handed alpha
Helix 55	AG1	C	127	131	Right-handed 310
Helix 56	AG2	C	141	147	Right-handed alpha
Helix 57	AG3	C	148	155	Right-handed alpha
Helix 58	AG4	C	189	203	Right-handed alpha
Helix 59	AG5	C	220	227	Right-handed alpha
Helix 60	AG6	C	230	236	Right-handed 310
Helix 61	AG7	C	289	306	Right-handed alpha
Helix 62	AG8	C	315	319	Right-handed 310
Helix 63	AG9	C	342	344	Right-handed 310
Helix 64	AH1	C	356	370	Right-handed alpha
Helix 65	AH2	C	389	394	Right-handed alpha
Helix 66	AH3	C	395	398	Right-handed 310
Helix 67	AH4	C	420	435	Right-handed alpha
Helix 68	AH5	C	452	457	Right-handed alpha
Helix 69	AH6	C	458	460	Right-handed 310
Helix 70	AH7	C	461	472	Right-handed alpha
Helix 71	AH8	C	502	506	Right-handed 310
Helix 72	AH9	C	514	519	Right-handed 310
Helix 73	AI1	C	530	535	Right-handed 310
Helix 74	AI2	C	537	542	Right-handed alpha
Helix 75	AI3	C	547	562	Right-handed alpha
Helix 76	AI4	C	562	567	Right-handed alpha
Helix 77	AI5	C	606	610	Right-handed 310
Helix 78	AI6	C	625	629	Right-handed 310
Helix 79	AI7	C	662	664	Right-handed 310
Helix 80	AI8	D	32	44	Right-handed alpha
Helix 81	AI9	D	51	59	Right-handed alpha
Helix 82	AJ1	D	61	90	Right-handed alpha
Helix 83	AJ2	D	96	104	Right-handed alpha
Helix 84	AJ3	D	105	119	Right-handed alpha
Helix 85	AJ4	D	119	138	Right-handed alpha
Helix 86	AJ5	D	139	141	Right-handed 310
Helix 87	AJ6	D	147	166	Right-handed alpha
Helix 88	AJ7	D	171	176	Right-handed alpha
Helix 89	AJ8	D	176	201	Right-handed alpha
Helix 90	AJ9	D	204	208	Right-handed 310
Helix 91	AK1	D	219	231	Right-handed alpha
Helix 92	AK2	D	235	239	Right-handed 310
Helix 93	AK3	D	250	275	Right-handed alpha
Helix 94	AK4	D	279	285	Right-handed alpha
Helix 95	AK5	D	288	297	Right-handed alpha
Helix 96	AK6	D	303	321	Right-handed alpha
Helix 97	AK7	D	325	334	Right-handed alpha
Helix 98	AK8	D	351	366	Right-handed alpha
Helix 99	AK9	D	373	396	Right-handed alpha
Helix 100	AL1	D	411	432	Right-handed alpha
Helix 101	AL2	D	435	455	Right-handed alpha
Helix 102	AL3	D	462	478	Right-handed alpha

There are 16 sheets in PDB entry 6LI9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	407	408	first strand
Strand 2	A	380	383	parallel
Strand 3	A	310	313	parallel
Strand 4	A	206	211	parallel
Strand 5	A	159	162	parallel
Strand 6	A	123	126	parallel
Strand 7	A	475	479	parallel
Strand 8	A	442	444	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	166	168	first strand
Strand 2	A	177	183	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	239	240	first strand
Strand 2	A	272	275	anti-parallel
Strand 3	A	264	267	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	329	330	first strand
Strand 2	A	346	347	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	632	634	first strand
Strand 2	A	617	623	anti-parallel
Strand 3	A	645	651	anti-parallel
Strand 4	A	591	598	anti-parallel
Strand 5	A	579	585	anti-parallel
Strand 6	A	569	572	anti-parallel
Strand 7	A	666	667	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	603	605	first strand
Strand 2	A	638	640	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	673	675	first strand
Strand 2	A	680	682	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	344	345	first strand
Strand 2	B	479	480	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	407	408	first strand
Strand 2	C	380	383	parallel
Strand 3	C	310	313	parallel
Strand 4	C	206	211	parallel
Strand 5	C	159	162	parallel
Strand 6	C	123	126	parallel
Strand 7	C	475	479	parallel
Strand 8	C	442	444	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	166	168	first strand
Strand 2	C	177	183	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	239	240	first strand
Strand 2	C	272	275	anti-parallel
Strand 3	C	264	267	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	329	330	first strand
Strand 2	C	346	347	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	632	634	first strand
Strand 2	C	617	623	anti-parallel
Strand 3	C	645	651	anti-parallel
Strand 4	C	591	598	anti-parallel
Strand 5	C	579	585	anti-parallel
Strand 6	C	569	572	anti-parallel
Strand 7	C	666	667	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	603	605	first strand
Strand 2	C	638	640	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	673	675	first strand
Strand 2	C	680	682	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	344	345	first strand
Strand 2	D	479	480	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6LI9

Analysis of interatomic Contacts of Structural Units in PDB entry:
6LI9