Analysis of interatomic Contacts of Structural Units in PDB entry:
6LIG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6LIG entry

There are 2 chains in PDB entry 6LIG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 3ILE 412
B
 PRO 3ILE 412
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 6LIG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 28Right-handed alpha
Helix 2
AA2
A
51 63Right-handed alpha
Helix 3
AA3
A
77 90Right-handed alpha
Helix 4
AA4
A
93 98Right-handed alpha
Helix 5
AA5
A
107 124Right-handed alpha
Helix 6
AA6
A
142 151Right-handed alpha
Helix 7
AA7
A
170 180Right-handed alpha
Helix 8
AA8
A
202 216Right-handed alpha
Helix 9
AA9
A
233 238Right-handed alpha
Helix 10
AB1
A
238 247Right-handed alpha
Helix 11
AB2
A
263 267Right-handed 310
Helix 12
AB3
A
277 294Right-handed alpha
Helix 13
AB4
A
301 313Right-handed alpha
Helix 14
AB5
A
313 345Right-handed alpha
Helix 15
AB6
A
352 357Right-handed alpha
Helix 16
AB7
A
367 377Right-handed alpha
Helix 17
AB8
A
391 393Right-handed 310
Helix 18
AB9
A
397 412Right-handed alpha
Helix 19
AC1
B
16 26Right-handed alpha
Helix 20
AC2
B
51 63Right-handed alpha
Helix 21
AC3
B
77 90Right-handed alpha
Helix 22
AC4
B
93 98Right-handed alpha
Helix 23
AC5
B
107 124Right-handed alpha
Helix 24
AC6
B
143 151Right-handed alpha
Helix 25
AC7
B
170 180Right-handed alpha
Helix 26
AC8
B
202 216Right-handed alpha
Helix 27
AC9
B
233 238Right-handed alpha
Helix 28
AD1
B
238 247Right-handed alpha
Helix 29
AD2
B
263 267Right-handed 310
Helix 30
AD3
B
277 295Right-handed alpha
Helix 31
AD4
B
301 313Right-handed alpha
Helix 32
AD5
B
313 345Right-handed alpha
Helix 33
AD6
B
352 357Right-handed alpha
Helix 34
AD7
B
367 377Right-handed alpha
Helix 35
AD8
B
391 393Right-handed 310
Helix 36
AD9
B
397 411Right-handed alpha
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There are 8 sheets in PDB entry 6LIG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 35first strand
Strand 2
A
380 381parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 106first strand
Strand 2
A
269 274anti-parallel
Strand 3
A
251 256anti-parallel
Strand 4
A
219 224parallel
Strand 5
A
186 190parallel
Strand 6
A
134 137parallel
Strand 7
A
156 159parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
162 163first strand
Strand 2
A
168 169anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
361 363first strand
Strand 2
A
387 389anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 35first strand
Strand 2
B
380 381parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
101 106first strand
Strand 2
B
269 274anti-parallel
Strand 3
B
251 256anti-parallel
Strand 4
B
219 224parallel
Strand 5
B
186 190parallel
Strand 6
B
134 136parallel
Strand 7
B
156 158parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
162 163first strand
Strand 2
B
168 169anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
361 363first strand
Strand 2
B
387 389anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il