Analysis of interatomic Contacts of Structural Units in PDB entry:
6LII

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6LII entry

There are 4 chains in PDB entry 6LII (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 45	PRO 389
B	PRO 45	PRO 389
C	PRO 45	PRO 389
D	PRO 45	PRO 389

There are 55 helices in PDB entry 6LII. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	58	60	Right-handed 310
Helix 2	AA2	A	89	97	Right-handed alpha
Helix 3	AA3	A	162	168	Right-handed alpha
Helix 4	AA4	A	169	181	Right-handed alpha
Helix 5	AA5	A	199	210	Right-handed alpha
Helix 6	AA6	A	222	224	Right-handed 310
Helix 7	AA7	A	225	233	Right-handed alpha
Helix 8	AA8	A	244	253	Right-handed alpha
Helix 9	AA9	A	266	275	Right-handed alpha
Helix 10	AB1	A	300	305	Right-handed 310
Helix 11	AB2	A	313	319	Right-handed alpha
Helix 12	AB3	A	327	331	Right-handed 310
Helix 13	AB4	A	334	351	Right-handed alpha
Helix 14	AB5	A	366	376	Right-handed alpha
Helix 15	AB6	B	58	60	Right-handed 310
Helix 16	AB7	B	89	97	Right-handed alpha
Helix 17	AB8	B	162	168	Right-handed alpha
Helix 18	AB9	B	169	181	Right-handed alpha
Helix 19	AC1	B	199	211	Right-handed alpha
Helix 20	AC2	B	222	233	Right-handed alpha
Helix 21	AC3	B	244	253	Right-handed alpha
Helix 22	AC4	B	266	275	Right-handed alpha
Helix 23	AC5	B	287	293	Right-handed alpha
Helix 24	AC6	B	313	320	Right-handed alpha
Helix 25	AC7	B	327	331	Right-handed 310
Helix 26	AC8	B	334	351	Right-handed alpha
Helix 27	AC9	B	366	376	Right-handed alpha
Helix 28	AD1	C	58	60	Right-handed 310
Helix 29	AD2	C	89	97	Right-handed alpha
Helix 30	AD3	C	162	168	Right-handed alpha
Helix 31	AD4	C	169	181	Right-handed alpha
Helix 32	AD5	C	199	211	Right-handed alpha
Helix 33	AD6	C	222	224	Right-handed 310
Helix 34	AD7	C	225	233	Right-handed alpha
Helix 35	AD8	C	244	253	Right-handed alpha
Helix 36	AD9	C	266	275	Right-handed alpha
Helix 37	AE1	C	300	305	Right-handed 310
Helix 38	AE2	C	313	319	Right-handed alpha
Helix 39	AE3	C	328	332	Right-handed 310
Helix 40	AE4	C	334	351	Right-handed alpha
Helix 41	AE5	C	366	376	Right-handed alpha
Helix 42	AE6	D	58	60	Right-handed 310
Helix 43	AE7	D	89	97	Right-handed alpha
Helix 44	AE8	D	162	167	Right-handed alpha
Helix 45	AE9	D	169	181	Right-handed alpha
Helix 46	AF1	D	199	211	Right-handed alpha
Helix 47	AF2	D	222	233	Right-handed alpha
Helix 48	AF3	D	244	253	Right-handed alpha
Helix 49	AF4	D	266	275	Right-handed alpha
Helix 50	AF5	D	287	292	Right-handed alpha
Helix 51	AF6	D	302	306	Right-handed 310
Helix 52	AF7	D	313	320	Right-handed alpha
Helix 53	AF8	D	327	332	Right-handed 310
Helix 54	AF9	D	334	351	Right-handed alpha
Helix 55	AG1	D	366	376	Right-handed alpha

There are 16 sheets in PDB entry 6LII. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	53	first strand
Strand 2	A	62	68	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	146	150	first strand
Strand 2	A	78	88	anti-parallel
Strand 3	A	113	121	anti-parallel
Strand 4	A	133	137	anti-parallel
Strand 5	A	154	156	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	146	150	first strand
Strand 2	A	78	88	anti-parallel
Strand 3	A	382	386	anti-parallel
Strand 4	A	358	363	parallel

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There are 12 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	236	238	first strand
Strand 2	A	216	220	parallel
Strand 3	A	191	195	parallel
Strand 4	A	257	262	parallel
Strand 5	A	276	284	parallel
Strand 6	A	321	325	parallel
Strand 7	B	321	325	anti-parallel
Strand 8	B	276	284	parallel
Strand 9	B	257	262	parallel
Strand 10	B	191	194	parallel
Strand 11	B	216	220	parallel
Strand 12	B	236	238	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	310	312	first strand
Strand 2	B	310	312	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	53	first strand
Strand 2	B	62	68	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	150	first strand
Strand 2	B	78	87	anti-parallel
Strand 3	B	113	121	anti-parallel
Strand 4	B	133	137	anti-parallel
Strand 5	B	154	156	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	150	first strand
Strand 2	B	78	87	anti-parallel
Strand 3	B	382	386	anti-parallel
Strand 4	B	358	363	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	49	53	first strand
Strand 2	C	62	66	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	146	150	first strand
Strand 2	C	78	88	anti-parallel
Strand 3	C	113	120	anti-parallel
Strand 4	C	133	137	anti-parallel
Strand 5	C	154	156	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	146	150	first strand
Strand 2	C	78	88	anti-parallel
Strand 3	C	382	386	anti-parallel
Strand 4	C	358	363	parallel

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There are 12 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	236	238	first strand
Strand 2	C	216	220	parallel
Strand 3	C	191	194	parallel
Strand 4	C	257	262	parallel
Strand 5	C	276	284	parallel
Strand 6	C	322	325	parallel
Strand 7	D	321	325	anti-parallel
Strand 8	D	276	284	parallel
Strand 9	D	257	262	parallel
Strand 10	D	191	195	parallel
Strand 11	D	216	220	parallel
Strand 12	D	236	238	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	310	312	first strand
Strand 2	D	310	312	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	47	53	first strand
Strand 2	D	62	68	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	146	150	first strand
Strand 2	D	78	87	anti-parallel
Strand 3	D	113	121	anti-parallel
Strand 4	D	133	137	anti-parallel
Strand 5	D	154	156	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	146	150	first strand
Strand 2	D	78	87	anti-parallel
Strand 3	D	382	386	anti-parallel
Strand 4	D	358	363	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6LII

Analysis of interatomic Contacts of Structural Units in PDB entry:
6LII