Analysis of interatomic Contacts of Structural Units in PDB entry:
6LIN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6LIN entry

There are 4 chains in PDB entry 6LIN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 4	ILE 385
B	LEU 13	ILE 385
C	ASP 3	THR 384
D	LEU 13	TYR 382

There are 57 helices in PDB entry 6LIN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	5	13	Right-handed alpha
Helix 2	AA2	A	15	24	Right-handed alpha
Helix 3	AA3	A	32	39	Right-handed alpha
Helix 4	AA4	A	45	69	Right-handed alpha
Helix 5	AA5	A	72	77	Right-handed alpha
Helix 6	AA6	A	78	97	Right-handed alpha
Helix 7	AA7	A	105	123	Right-handed alpha
Helix 8	AA8	A	125	139	Right-handed alpha
Helix 9	AA9	A	144	176	Right-handed alpha
Helix 10	AB1	A	197	216	Right-handed alpha
Helix 11	AB2	A	241	263	Right-handed alpha
Helix 12	AB3	A	296	298	Right-handed 310
Helix 13	AB4	A	299	304	Right-handed alpha
Helix 14	AB5	A	328	340	Right-handed alpha
Helix 15	AB6	B	15	24	Right-handed alpha
Helix 16	AB7	B	32	38	Right-handed alpha
Helix 17	AB8	B	42	69	Right-handed alpha
Helix 18	AB9	B	72	77	Right-handed alpha
Helix 19	AC1	B	78	97	Right-handed alpha
Helix 20	AC2	B	105	123	Right-handed alpha
Helix 21	AC3	B	125	142	Right-handed alpha
Helix 22	AC4	B	144	176	Right-handed alpha
Helix 23	AC5	B	197	216	Right-handed alpha
Helix 24	AC6	B	241	263	Right-handed alpha
Helix 25	AC7	B	296	298	Right-handed 310
Helix 26	AC8	B	299	304	Right-handed alpha
Helix 27	AC9	B	328	340	Right-handed alpha
Helix 28	AD1	C	5	13	Right-handed alpha
Helix 29	AD2	C	15	24	Right-handed alpha
Helix 30	AD3	C	32	40	Right-handed alpha
Helix 31	AD4	C	41	44	Right-handed 310
Helix 32	AD5	C	45	69	Right-handed alpha
Helix 33	AD6	C	72	77	Right-handed alpha
Helix 34	AD7	C	78	97	Right-handed alpha
Helix 35	AD8	C	105	123	Right-handed alpha
Helix 36	AD9	C	125	139	Right-handed alpha
Helix 37	AE1	C	146	176	Right-handed alpha
Helix 38	AE2	C	197	216	Right-handed alpha
Helix 39	AE3	C	241	263	Right-handed alpha
Helix 40	AE4	C	296	298	Right-handed 310
Helix 41	AE5	C	299	304	Right-handed alpha
Helix 42	AE6	C	328	340	Right-handed alpha
Helix 43	AE7	D	15	24	Right-handed alpha
Helix 44	AE8	D	32	39	Right-handed alpha
Helix 45	AE9	D	40	44	Right-handed 310
Helix 46	AF1	D	45	69	Right-handed alpha
Helix 47	AF2	D	72	77	Right-handed alpha
Helix 48	AF3	D	78	97	Right-handed alpha
Helix 49	AF4	D	105	123	Right-handed alpha
Helix 50	AF5	D	125	139	Right-handed alpha
Helix 51	AF6	D	144	177	Right-handed alpha
Helix 52	AF7	D	197	216	Right-handed alpha
Helix 53	AF8	D	241	263	Right-handed alpha
Helix 54	AF9	D	296	298	Right-handed 310
Helix 55	AG1	D	299	304	Right-handed alpha
Helix 56	AG2	D	328	340	Right-handed alpha
Helix 57	AG3	D	375	381	Right-handed alpha

There are 8 sheets in PDB entry 6LIN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	192	196	first strand
Strand 2	A	237	240	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	222	228	first strand
Strand 2	A	273	279	parallel
Strand 3	A	283	290	anti-parallel
Strand 4	A	353	361	anti-parallel
Strand 5	A	343	349	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	192	196	first strand
Strand 2	B	237	240	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	222	228	first strand
Strand 2	B	273	279	parallel
Strand 3	B	283	290	anti-parallel
Strand 4	B	353	361	anti-parallel
Strand 5	B	343	349	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	192	196	first strand
Strand 2	C	237	240	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	222	228	first strand
Strand 2	C	273	279	parallel
Strand 3	C	283	290	anti-parallel
Strand 4	C	353	361	anti-parallel
Strand 5	C	343	349	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	192	196	first strand
Strand 2	D	237	240	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	222	228	first strand
Strand 2	D	273	279	parallel
Strand 3	D	283	290	anti-parallel
Strand 4	D	353	361	anti-parallel
Strand 5	D	343	349	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6LIN

Analysis of interatomic Contacts of Structural Units in PDB entry:
6LIN