Analysis of interatomic Contacts of Structural Units in PDB entry:
6LIO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6LIO entry

There are 2 chains in PDB entry 6LIO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 14TYR 382
B
 ASP 4THR 384
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 6LIO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 24Right-handed alpha
Helix 2
AA2
A
32 40Right-handed alpha
Helix 3
AA3
A
45 69Right-handed alpha
Helix 4
AA4
A
72 77Right-handed alpha
Helix 5
AA5
A
78 97Right-handed alpha
Helix 6
AA6
A
105 123Right-handed alpha
Helix 7
AA7
A
125 142Right-handed alpha
Helix 8
AA8
A
144 147Right-handed 310
Helix 9
AA9
A
148 177Right-handed alpha
Helix 10
AB1
A
197 217Right-handed alpha
Helix 11
AB2
A
241 264Right-handed alpha
Helix 12
AB3
A
296 298Right-handed 310
Helix 13
AB4
A
299 304Right-handed alpha
Helix 14
AB5
A
328 340Right-handed alpha
Helix 15
AB6
A
375 382Right-handed alpha
Helix 16
AB7
B
12 14Right-handed 310
Helix 17
AB8
B
15 24Right-handed alpha
Helix 18
AB9
B
32 39Right-handed alpha
Helix 19
AC1
B
40 41Right-handed 310
Helix 20
AC2
B
42 43Right-handed 310
Helix 21
AC3
B
44 69Right-handed alpha
Helix 22
AC4
B
72 77Right-handed alpha
Helix 23
AC5
B
78 97Right-handed alpha
Helix 24
AC6
B
105 123Right-handed alpha
Helix 25
AC7
B
125 142Right-handed alpha
Helix 26
AC8
B
144 147Right-handed 310
Helix 27
AC9
B
148 177Right-handed alpha
Helix 28
AD1
B
197 216Right-handed alpha
Helix 29
AD2
B
241 263Right-handed alpha
Helix 30
AD3
B
296 298Right-handed 310
Helix 31
AD4
B
299 304Right-handed alpha
Helix 32
AD5
B
328 340Right-handed alpha
Helix 33
AD6
B
375 382Right-handed alpha
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There are 4 sheets in PDB entry 6LIO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
192 196first strand
Strand 2
A
237 240anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 228first strand
Strand 2
A
273 279parallel
Strand 3
A
283 290anti-parallel
Strand 4
A
353 361anti-parallel
Strand 5
A
343 349anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
192 196first strand
Strand 2
B
237 240anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
222 228first strand
Strand 2
B
273 279parallel
Strand 3
B
283 290anti-parallel
Strand 4
B
353 361anti-parallel
Strand 5
B
343 349anti-parallel
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