Analysis of interatomic Contacts of Structural Units in PDB entry:
6LIR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6LIR entry

There are 4 chains in PDB entry 6LIR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 1	PRO 195
B	GLU 1	THR 222
C	GLN 1	PRO 195
D	GLU 1	THR 222

There are 10 helices in PDB entry 6LIR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	78	82	Right-handed 310
Helix 2	AA2	A	176	178	Right-handed 310
Helix 3	AA3	B	79	83	Right-handed 310
Helix 4	AA4	B	127	135	Right-handed alpha
Helix 5	AA5	B	189	193	Right-handed alpha
Helix 6	AA6	C	78	82	Right-handed 310
Helix 7	AA7	C	176	178	Right-handed 310
Helix 8	AA8	D	79	83	Right-handed 310
Helix 9	AA9	D	127	135	Right-handed alpha
Helix 10	AB1	D	189	193	Right-handed alpha

There are 21 sheets in PDB entry 6LIR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	7	11	first strand
Strand 2	A	103	108	parallel
Strand 3	A	84	90	anti-parallel
Strand 4	A	29	35	anti-parallel
Strand 5	A	42	47	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	7	11	first strand
Strand 2	A	103	108	parallel
Strand 3	A	84	90	anti-parallel
Strand 4	A	97	99	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	16	21	first strand
Strand 2	A	69	74	anti-parallel
Strand 3	A	59	63	anti-parallel
Strand 4	A	51	54	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	116	121	first strand
Strand 2	A	128	134	anti-parallel
Strand 3	A	164	174	anti-parallel
Strand 4	A	150	156	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	141	142	first strand
Strand 2	A	181	184	anti-parallel
Strand 3	A	188	191	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	7	11	first strand
Strand 2	B	105	110	parallel
Strand 3	B	84	91	anti-parallel
Strand 4	B	28	34	anti-parallel
Strand 5	B	40	48	anti-parallel
Strand 6	B	51	54	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	7	11	first strand
Strand 2	B	105	110	parallel
Strand 3	B	84	91	anti-parallel
Strand 4	B	100	101	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	21	first strand
Strand 2	B	70	75	anti-parallel
Strand 3	B	61	67	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	120	124	first strand
Strand 2	B	136	146	anti-parallel
Strand 3	B	178	188	anti-parallel
Strand 4	B	166	168	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	120	124	first strand
Strand 2	B	136	146	anti-parallel
Strand 3	B	178	188	anti-parallel
Strand 4	B	173	175	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	160	162	first strand
Strand 2	B	152	157	anti-parallel
Strand 3	B	198	207	anti-parallel
Strand 4	B	210	219	anti-parallel
Strand 5	D	210	219	anti-parallel
Strand 6	D	198	207	anti-parallel
Strand 7	D	152	157	anti-parallel
Strand 8	D	160	162	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	7	11	first strand
Strand 2	C	103	108	parallel
Strand 3	C	83	90	anti-parallel
Strand 4	C	29	35	anti-parallel
Strand 5	C	41	47	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	7	11	first strand
Strand 2	C	103	108	parallel
Strand 3	C	83	90	anti-parallel
Strand 4	C	97	99	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	16	21	first strand
Strand 2	C	69	74	anti-parallel
Strand 3	C	59	63	anti-parallel
Strand 4	C	51	54	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	116	122	first strand
Strand 2	C	125	134	anti-parallel
Strand 3	C	162	174	anti-parallel
Strand 4	C	150	159	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	141	142	first strand
Strand 2	C	181	184	anti-parallel
Strand 3	C	188	191	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2	3	first strand
Strand 2	D	16	22	anti-parallel
Strand 3	D	70	75	anti-parallel
Strand 4	D	61	64	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	7	11	first strand
Strand 2	D	105	110	parallel
Strand 3	D	84	91	anti-parallel
Strand 4	D	28	34	anti-parallel
Strand 5	D	41	48	anti-parallel
Strand 6	D	51	54	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	7	11	first strand
Strand 2	D	105	110	parallel
Strand 3	D	84	91	anti-parallel
Strand 4	D	100	101	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	120	124	first strand
Strand 2	D	136	146	anti-parallel
Strand 3	D	178	188	anti-parallel
Strand 4	D	166	168	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	120	124	first strand
Strand 2	D	136	146	anti-parallel
Strand 3	D	178	188	anti-parallel
Strand 4	D	173	175	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6LIR

Analysis of interatomic Contacts of Structural Units in PDB entry:
6LIR