Analysis of interatomic Contacts of Structural Units in PDB entry:
6LIT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6LIT entry

There are 4 chains in PDB entry 6LIT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 235LYS 432
B
 GLY 235ALA 431
D
 LYS 629GLN 638
E
 LYS 629ASP 639
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 22 helices in PDB entry 6LIT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
235 259Right-handed alpha
Helix 2
AA2
A
263 267Right-handed 310
Helix 3
AA3
A
268 293Right-handed alpha
Helix 4
AA4
A
308 315Right-handed alpha
Helix 5
AA5
A
317 335Right-handed alpha
Helix 6
AA6
A
337 351Right-handed alpha
Helix 7
AA7
A
359 382Right-handed alpha
Helix 8
AA8
A
387 394Right-handed alpha
Helix 9
AA9
A
395 417Right-handed alpha
Helix 10
AB1
A
422 431Right-handed alpha
Helix 11
AB2
B
236 260Right-handed alpha
Helix 12
AB3
B
263 267Right-handed 310
Helix 13
AB4
B
268 293Right-handed alpha
Helix 14
AB5
B
308 315Right-handed alpha
Helix 15
AB6
B
317 335Right-handed alpha
Helix 16
AB7
B
337 351Right-handed alpha
Helix 17
AB8
B
359 382Right-handed alpha
Helix 18
AB9
B
387 394Right-handed alpha
Helix 19
AC1
B
395 417Right-handed alpha
Helix 20
AC2
B
422 431Right-handed alpha
Helix 21
AC3
D
630 637Right-handed alpha
Helix 22
AC4
E
630 639Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 6LIT. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
299 302first strand
Strand 2
A
305 307anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
299 302first strand
Strand 2
B
305 307anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il