Analysis of interatomic Contacts of Structural Units in PDB entry:
6LIU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6LIU entry

There are 6 chains in PDB entry 6LIU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 19	ALA 527
B	THR 19	ALA 527
C	THR 19	PHE 524
D	THR 19	PHE 524
E	THR 19	ILE 520
F	THR 19	PHE 524

There are138 helices in PDB entry 6LIU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	23	45	Right-handed alpha
Helix 2	AA2	A	46	48	Right-handed 310
Helix 3	AA3	A	57	63	Right-handed alpha
Helix 4	AA4	A	73	85	Right-handed alpha
Helix 5	AA5	A	86	89	Right-handed 310
Helix 6	AA6	A	106	120	Right-handed alpha
Helix 7	AA7	A	129	147	Right-handed alpha
Helix 8	AA8	A	166	187	Right-handed alpha
Helix 9	AA9	A	188	192	Right-handed 310
Helix 10	AB1	A	203	213	Right-handed alpha
Helix 11	AB2	A	216	218	Right-handed 310
Helix 12	AB3	A	226	230	Right-handed 310
Helix 13	AB4	A	234	248	Right-handed alpha
Helix 14	AB5	A	269	280	Right-handed alpha
Helix 15	AB6	A	290	305	Right-handed 310
Helix 16	AB7	A	306	310	Right-handed 310
Helix 17	AB8	A	317	321	Right-handed alpha
Helix 18	AB9	A	334	343	Right-handed alpha
Helix 19	AC1	A	361	366	Right-handed 310
Helix 20	AC2	A	374	410	Right-handed alpha
Helix 21	AC3	A	458	476	Right-handed alpha
Helix 22	AC4	A	502	523	Right-handed alpha
Helix 23	AC5	B	23	45	Right-handed alpha
Helix 24	AC6	B	46	48	Right-handed 310
Helix 25	AC7	B	57	63	Right-handed alpha
Helix 26	AC8	B	73	84	Right-handed alpha
Helix 27	AC9	B	85	89	Right-handed 310
Helix 28	AD1	B	106	120	Right-handed alpha
Helix 29	AD2	B	129	147	Right-handed alpha
Helix 30	AD3	B	166	187	Right-handed alpha
Helix 31	AD4	B	188	192	Right-handed 310
Helix 32	AD5	B	203	213	Right-handed alpha
Helix 33	AD6	B	216	218	Right-handed 310
Helix 34	AD7	B	226	230	Right-handed 310
Helix 35	AD8	B	234	248	Right-handed alpha
Helix 36	AD9	B	269	280	Right-handed alpha
Helix 37	AE1	B	290	297	Right-handed 310
Helix 38	AE2	B	300	305	Right-handed 310
Helix 39	AE3	B	306	310	Right-handed 310
Helix 40	AE4	B	317	321	Right-handed alpha
Helix 41	AE5	B	334	343	Right-handed alpha
Helix 42	AE6	B	361	366	Right-handed 310
Helix 43	AE7	B	374	410	Right-handed alpha
Helix 44	AE8	B	458	476	Right-handed alpha
Helix 45	AE9	B	502	523	Right-handed alpha
Helix 46	AF1	C	23	45	Right-handed alpha
Helix 47	AF2	C	46	48	Right-handed 310
Helix 48	AF3	C	57	63	Right-handed alpha
Helix 49	AF4	C	73	84	Right-handed alpha
Helix 50	AF5	C	85	89	Right-handed 310
Helix 51	AF6	C	106	120	Right-handed alpha
Helix 52	AF7	C	129	147	Right-handed alpha
Helix 53	AF8	C	150	154	Right-handed 310
Helix 54	AF9	C	166	187	Right-handed alpha
Helix 55	AG1	C	188	192	Right-handed 310
Helix 56	AG2	C	203	213	Right-handed alpha
Helix 57	AG3	C	216	218	Right-handed 310
Helix 58	AG4	C	226	230	Right-handed 310
Helix 59	AG5	C	234	248	Right-handed alpha
Helix 60	AG6	C	269	280	Right-handed alpha
Helix 61	AG7	C	290	297	Right-handed 310
Helix 62	AG8	C	300	305	Right-handed 310
Helix 63	AG9	C	306	310	Right-handed 310
Helix 64	AH1	C	317	321	Right-handed alpha
Helix 65	AH2	C	334	343	Right-handed alpha
Helix 66	AH3	C	361	366	Right-handed 310
Helix 67	AH4	C	374	410	Right-handed alpha
Helix 68	AH5	C	458	477	Right-handed alpha
Helix 69	AH6	C	502	523	Right-handed alpha
Helix 70	AH7	D	23	45	Right-handed alpha
Helix 71	AH8	D	46	48	Right-handed 310
Helix 72	AH9	D	57	63	Right-handed alpha
Helix 73	AI1	D	73	84	Right-handed alpha
Helix 74	AI2	D	85	89	Right-handed 310
Helix 75	AI3	D	106	120	Right-handed alpha
Helix 76	AI4	D	129	147	Right-handed alpha
Helix 77	AI5	D	150	154	Right-handed 310
Helix 78	AI6	D	166	187	Right-handed alpha
Helix 79	AI7	D	188	192	Right-handed 310
Helix 80	AI8	D	203	213	Right-handed alpha
Helix 81	AI9	D	216	218	Right-handed 310
Helix 82	AJ1	D	226	230	Right-handed 310
Helix 83	AJ2	D	234	248	Right-handed alpha
Helix 84	AJ3	D	269	280	Right-handed alpha
Helix 85	AJ4	D	290	305	Right-handed 310
Helix 86	AJ5	D	306	310	Right-handed 310
Helix 87	AJ6	D	317	321	Right-handed alpha
Helix 88	AJ7	D	334	343	Right-handed alpha
Helix 89	AJ8	D	361	366	Right-handed 310
Helix 90	AJ9	D	374	410	Right-handed alpha
Helix 91	AK1	D	458	476	Right-handed alpha
Helix 92	AK2	D	502	523	Right-handed alpha
Helix 93	AK3	E	23	44	Right-handed alpha
Helix 94	AK4	E	73	85	Right-handed alpha
Helix 95	AK5	E	111	120	Right-handed alpha
Helix 96	AK6	E	125	128	Right-handed 310
Helix 97	AK7	E	129	134	Right-handed alpha
Helix 98	AK8	E	140	147	Right-handed alpha
Helix 99	AK9	E	166	187	Right-handed alpha
Helix 100	AL1	E	188	192	Right-handed 310
Helix 101	AL2	E	204	214	Right-handed alpha
Helix 102	AL3	E	216	218	Right-handed 310
Helix 103	AL4	E	226	230	Right-handed 310
Helix 104	AL5	E	234	248	Right-handed alpha
Helix 105	AL6	E	269	280	Right-handed alpha
Helix 106	AL7	E	292	297	Right-handed 310
Helix 107	AL8	E	300	305	Right-handed 310
Helix 108	AL9	E	306	310	Right-handed 310
Helix 109	AM1	E	317	321	Right-handed alpha
Helix 110	AM2	E	335	343	Right-handed alpha
Helix 111	AM3	E	362	366	Right-handed 310
Helix 112	AM4	E	375	386	Right-handed alpha
Helix 113	AM5	E	386	399	Right-handed alpha
Helix 114	AM6	E	400	410	Right-handed alpha
Helix 115	AM7	E	458	476	Right-handed alpha
Helix 116	AM8	E	502	520	Right-handed alpha
Helix 117	AM9	F	23	44	Right-handed alpha
Helix 118	AN1	F	45	48	Right-handed 310
Helix 119	AN2	F	107	116	Right-handed alpha
Helix 120	AN3	F	129	147	Right-handed alpha
Helix 121	AN4	F	166	187	Right-handed alpha
Helix 122	AN5	F	188	192	Right-handed 310
Helix 123	AN6	F	204	213	Right-handed alpha
Helix 124	AN7	F	216	218	Right-handed 310
Helix 125	AN8	F	234	248	Right-handed alpha
Helix 126	AN9	F	269	280	Right-handed alpha
Helix 127	AO1	F	292	297	Right-handed 310
Helix 128	AO2	F	300	305	Right-handed 310
Helix 129	AO3	F	306	310	Right-handed 310
Helix 130	AO4	F	317	321	Right-handed alpha
Helix 131	AO5	F	334	343	Right-handed alpha
Helix 132	AO6	F	361	366	Right-handed 310
Helix 133	AO7	F	373	381	Right-handed alpha
Helix 134	AO8	F	394	399	Right-handed alpha
Helix 135	AO9	F	401	410	Right-handed alpha
Helix 136	AP1	F	458	468	Right-handed alpha
Helix 137	AP2	F	502	508	Right-handed alpha
Helix 138	AP3	F	517	522	Right-handed alpha

There are 12 sheets in PDB entry 6LIU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	160	164	first strand
Strand 2	A	328	332	anti-parallel
Strand 3	A	312	316	anti-parallel
Strand 4	A	283	287	parallel
Strand 5	A	251	255	parallel
Strand 6	A	194	199	parallel
Strand 7	A	220	223	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	414	416	first strand
Strand 2	A	424	429	anti-parallel
Strand 3	A	489	495	anti-parallel
Strand 4	A	482	486	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	160	164	first strand
Strand 2	B	328	332	anti-parallel
Strand 3	B	312	316	anti-parallel
Strand 4	B	283	287	parallel
Strand 5	B	251	255	parallel
Strand 6	B	194	199	parallel
Strand 7	B	220	223	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	414	416	first strand
Strand 2	B	424	429	anti-parallel
Strand 3	B	489	495	anti-parallel
Strand 4	B	483	486	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	160	164	first strand
Strand 2	C	328	332	anti-parallel
Strand 3	C	312	316	anti-parallel
Strand 4	C	283	287	parallel
Strand 5	C	251	255	parallel
Strand 6	C	194	199	parallel
Strand 7	C	220	223	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	414	416	first strand
Strand 2	C	424	429	anti-parallel
Strand 3	C	489	495	anti-parallel
Strand 4	C	483	486	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	160	164	first strand
Strand 2	D	328	332	anti-parallel
Strand 3	D	312	316	anti-parallel
Strand 4	D	283	287	parallel
Strand 5	D	251	255	parallel
Strand 6	D	194	199	parallel
Strand 7	D	220	223	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	414	416	first strand
Strand 2	D	424	429	anti-parallel
Strand 3	D	489	495	anti-parallel
Strand 4	D	483	486	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	160	164	first strand
Strand 2	E	328	332	anti-parallel
Strand 3	E	312	316	anti-parallel
Strand 4	E	283	287	parallel
Strand 5	E	251	255	parallel
Strand 6	E	194	199	parallel
Strand 7	E	220	223	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	414	416	first strand
Strand 2	E	424	429	anti-parallel
Strand 3	E	489	495	anti-parallel
Strand 4	E	482	486	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	160	164	first strand
Strand 2	F	328	332	anti-parallel
Strand 3	F	312	316	anti-parallel
Strand 4	F	283	288	parallel
Strand 5	F	251	255	parallel
Strand 6	F	194	199	parallel
Strand 7	F	220	223	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	425	427	first strand
Strand 2	F	489	494	anti-parallel
Strand 3	F	484	486	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6LIU

Analysis of interatomic Contacts of Structural Units in PDB entry:
6LIU