Analysis of interatomic Contacts of Structural Units in PDB entry:
6LIV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6LIV entry

There are 12 chains in PDB entry 6LIV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 17	HIS 318
A	TRP 320	SER 531
B	GLY 17	HIS 318
B	TRP 320	SER 531
C	GLY 17	HIS 318
C	TRP 320	SER 531
D	GLY 17	HIS 318
D	TRP 320	SER 531
E	THR 19	HIS 318
E	TRP 320	SER 531
F	THR 19	HIS 318
F	TRP 320	SER 531

There are147 helices in PDB entry 6LIV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	23	45	Right-handed alpha
Helix 2	AA2	A	46	48	Right-handed 310
Helix 3	AA3	A	57	63	Right-handed alpha
Helix 4	AA4	A	73	84	Right-handed alpha
Helix 5	AA5	A	85	89	Right-handed 310
Helix 6	AA6	A	106	120	Right-handed alpha
Helix 7	AA7	A	129	147	Right-handed alpha
Helix 8	AA8	A	150	154	Right-handed 310
Helix 9	AA9	A	166	187	Right-handed alpha
Helix 10	AB1	A	188	192	Right-handed 310
Helix 11	AB2	A	203	213	Right-handed alpha
Helix 12	AB3	A	216	218	Right-handed 310
Helix 13	AB4	A	226	230	Right-handed 310
Helix 14	AB5	A	234	248	Right-handed alpha
Helix 15	AB6	A	269	280	Right-handed alpha
Helix 16	AB7	A	290	305	Right-handed 310
Helix 17	AB8	A	306	310	Right-handed 310
Helix 18	AB9	A	317	321	Right-handed alpha
Helix 19	AC1	A	334	343	Right-handed alpha
Helix 20	AC2	A	346	351	Right-handed alpha
Helix 21	AC3	A	361	366	Right-handed 310
Helix 22	AC4	A	374	411	Right-handed alpha
Helix 23	AC5	A	458	476	Right-handed alpha
Helix 24	AC6	A	502	523	Right-handed alpha
Helix 25	AC7	A	524	529	Right-handed 310
Helix 26	AC8	B	23	45	Right-handed alpha
Helix 27	AC9	B	46	48	Right-handed 310
Helix 28	AD1	B	57	63	Right-handed alpha
Helix 29	AD2	B	73	84	Right-handed alpha
Helix 30	AD3	B	85	89	Right-handed 310
Helix 31	AD4	B	106	120	Right-handed alpha
Helix 32	AD5	B	129	147	Right-handed alpha
Helix 33	AD6	B	150	154	Right-handed 310
Helix 34	AD7	B	166	187	Right-handed alpha
Helix 35	AD8	B	188	192	Right-handed 310
Helix 36	AD9	B	203	213	Right-handed alpha
Helix 37	AE1	B	216	218	Right-handed 310
Helix 38	AE2	B	226	230	Right-handed 310
Helix 39	AE3	B	234	248	Right-handed alpha
Helix 40	AE4	B	269	280	Right-handed alpha
Helix 41	AE5	B	290	305	Right-handed 310
Helix 42	AE6	B	306	310	Right-handed 310
Helix 43	AE7	B	317	321	Right-handed alpha
Helix 44	AE8	B	334	343	Right-handed alpha
Helix 45	AE9	B	361	366	Right-handed 310
Helix 46	AF1	B	374	410	Right-handed alpha
Helix 47	AF2	B	458	476	Right-handed alpha
Helix 48	AF3	B	502	523	Right-handed alpha
Helix 49	AF4	B	525	529	Right-handed 310
Helix 50	AF5	C	23	45	Right-handed alpha
Helix 51	AF6	C	46	48	Right-handed 310
Helix 52	AF7	C	57	63	Right-handed alpha
Helix 53	AF8	C	73	84	Right-handed alpha
Helix 54	AF9	C	85	89	Right-handed 310
Helix 55	AG1	C	106	120	Right-handed alpha
Helix 56	AG2	C	129	147	Right-handed alpha
Helix 57	AG3	C	150	154	Right-handed 310
Helix 58	AG4	C	166	187	Right-handed alpha
Helix 59	AG5	C	188	192	Right-handed 310
Helix 60	AG6	C	203	213	Right-handed alpha
Helix 61	AG7	C	216	218	Right-handed 310
Helix 62	AG8	C	226	230	Right-handed 310
Helix 63	AG9	C	234	248	Right-handed alpha
Helix 64	AH1	C	269	280	Right-handed alpha
Helix 65	AH2	C	290	305	Right-handed 310
Helix 66	AH3	C	306	310	Right-handed 310
Helix 67	AH4	C	317	321	Right-handed alpha
Helix 68	AH5	C	334	343	Right-handed alpha
Helix 69	AH6	C	361	366	Right-handed 310
Helix 70	AH7	C	374	410	Right-handed alpha
Helix 71	AH8	C	458	476	Right-handed alpha
Helix 72	AH9	C	502	524	Right-handed alpha
Helix 73	AI1	D	23	45	Right-handed alpha
Helix 74	AI2	D	46	48	Right-handed 310
Helix 75	AI3	D	57	63	Right-handed alpha
Helix 76	AI4	D	73	84	Right-handed alpha
Helix 77	AI5	D	85	89	Right-handed 310
Helix 78	AI6	D	106	120	Right-handed alpha
Helix 79	AI7	D	129	147	Right-handed alpha
Helix 80	AI8	D	150	154	Right-handed 310
Helix 81	AI9	D	166	187	Right-handed alpha
Helix 82	AJ1	D	188	192	Right-handed 310
Helix 83	AJ2	D	203	213	Right-handed alpha
Helix 84	AJ3	D	216	218	Right-handed 310
Helix 85	AJ4	D	226	230	Right-handed 310
Helix 86	AJ5	D	234	248	Right-handed alpha
Helix 87	AJ6	D	269	280	Right-handed alpha
Helix 88	AJ7	D	290	297	Right-handed 310
Helix 89	AJ8	D	300	305	Right-handed 310
Helix 90	AJ9	D	306	310	Right-handed 310
Helix 91	AK1	D	317	321	Right-handed alpha
Helix 92	AK2	D	334	343	Right-handed alpha
Helix 93	AK3	D	346	350	Right-handed 310
Helix 94	AK4	D	361	366	Right-handed 310
Helix 95	AK5	D	374	411	Right-handed alpha
Helix 96	AK6	D	458	476	Right-handed alpha
Helix 97	AK7	D	502	523	Right-handed alpha
Helix 98	AK8	E	23	44	Right-handed alpha
Helix 99	AK9	E	73	85	Right-handed alpha
Helix 100	AL1	E	106	120	Right-handed alpha
Helix 101	AL2	E	129	147	Right-handed alpha
Helix 102	AL3	E	166	187	Right-handed alpha
Helix 103	AL4	E	188	192	Right-handed 310
Helix 104	AL5	E	203	214	Right-handed alpha
Helix 105	AL6	E	216	218	Right-handed 310
Helix 106	AL7	E	226	230	Right-handed 310
Helix 107	AL8	E	234	248	Right-handed alpha
Helix 108	AL9	E	269	280	Right-handed alpha
Helix 109	AM1	E	291	296	Right-handed 310
Helix 110	AM2	E	297	302	Right-handed alpha
Helix 111	AM3	E	303	305	Right-handed 310
Helix 112	AM4	E	306	310	Right-handed 310
Helix 113	AM5	E	317	321	Right-handed alpha
Helix 114	AM6	E	334	343	Right-handed alpha
Helix 115	AM7	E	361	365	Right-handed 310
Helix 116	AM8	E	375	385	Right-handed alpha
Helix 117	AM9	E	386	411	Right-handed alpha
Helix 118	AN1	E	458	475	Right-handed alpha
Helix 119	AN2	E	502	523	Right-handed alpha
Helix 120	AN3	E	524	529	Right-handed 310
Helix 121	AN4	F	25	44	Right-handed alpha
Helix 122	AN5	F	57	62	Right-handed alpha
Helix 123	AN6	F	74	78	Right-handed 310
Helix 124	AN7	F	79	84	Right-handed alpha
Helix 125	AN8	F	85	89	Right-handed 310
Helix 126	AN9	F	106	120	Right-handed alpha
Helix 127	AO1	F	129	147	Right-handed alpha
Helix 128	AO2	F	166	187	Right-handed alpha
Helix 129	AO3	F	188	191	Right-handed 310
Helix 130	AO4	F	203	213	Right-handed alpha
Helix 131	AO5	F	216	218	Right-handed 310
Helix 132	AO6	F	226	230	Right-handed 310
Helix 133	AO7	F	234	248	Right-handed alpha
Helix 134	AO8	F	269	278	Right-handed alpha
Helix 135	AO9	F	279	281	Right-handed 310
Helix 136	AP1	F	290	297	Right-handed 310
Helix 137	AP2	F	300	305	Right-handed 310
Helix 138	AP3	F	306	310	Right-handed 310
Helix 139	AP4	F	317	321	Right-handed alpha
Helix 140	AP5	F	334	343	Right-handed alpha
Helix 141	AP6	F	346	350	Right-handed 310
Helix 142	AP7	F	361	365	Right-handed 310
Helix 143	AP8	F	373	384	Right-handed alpha
Helix 144	AP9	F	387	393	Right-handed alpha
Helix 145	AQ1	F	394	412	Right-handed alpha
Helix 146	AQ2	F	458	476	Right-handed alpha
Helix 147	AQ3	F	502	521	Right-handed alpha

There are 12 sheets in PDB entry 6LIV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	160	164	first strand
Strand 2	A	328	332	anti-parallel
Strand 3	A	312	316	anti-parallel
Strand 4	A	283	287	parallel
Strand 5	A	251	255	parallel
Strand 6	A	194	199	parallel
Strand 7	A	220	223	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	414	416	first strand
Strand 2	A	424	429	anti-parallel
Strand 3	A	489	495	anti-parallel
Strand 4	A	483	486	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	160	164	first strand
Strand 2	B	328	332	anti-parallel
Strand 3	B	312	316	anti-parallel
Strand 4	B	283	287	parallel
Strand 5	B	251	255	parallel
Strand 6	B	194	199	parallel
Strand 7	B	220	223	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	414	416	first strand
Strand 2	B	424	429	anti-parallel
Strand 3	B	489	495	anti-parallel
Strand 4	B	483	486	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	160	164	first strand
Strand 2	C	328	332	anti-parallel
Strand 3	C	312	316	anti-parallel
Strand 4	C	283	287	parallel
Strand 5	C	251	255	parallel
Strand 6	C	194	199	parallel
Strand 7	C	220	223	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	414	416	first strand
Strand 2	C	424	429	anti-parallel
Strand 3	C	489	495	anti-parallel
Strand 4	C	483	486	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	160	164	first strand
Strand 2	D	328	332	anti-parallel
Strand 3	D	312	316	anti-parallel
Strand 4	D	283	287	parallel
Strand 5	D	251	255	parallel
Strand 6	D	194	199	parallel
Strand 7	D	220	223	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	414	416	first strand
Strand 2	D	424	429	anti-parallel
Strand 3	D	489	495	anti-parallel
Strand 4	D	483	486	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	160	164	first strand
Strand 2	E	328	332	anti-parallel
Strand 3	E	312	316	anti-parallel
Strand 4	E	283	287	parallel
Strand 5	E	251	255	parallel
Strand 6	E	194	199	parallel
Strand 7	E	220	223	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	414	416	first strand
Strand 2	E	424	429	anti-parallel
Strand 3	E	489	495	anti-parallel
Strand 4	E	483	486	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	160	164	first strand
Strand 2	F	328	332	anti-parallel
Strand 3	F	312	316	anti-parallel
Strand 4	F	283	287	parallel
Strand 5	F	251	255	parallel
Strand 6	F	194	199	parallel
Strand 7	F	220	223	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	414	416	first strand
Strand 2	F	424	429	anti-parallel
Strand 3	F	489	495	anti-parallel
Strand 4	F	483	486	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6LIV

Analysis of interatomic Contacts of Structural Units in PDB entry:
6LIV