Analysis of interatomic Contacts of Structural Units in PDB entry:
6LIY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6LIY entry

There are 2 chains in PDB entry 6LIY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 43ALA 237
B
 SER 42ALA 237
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 6LIY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
44 57Right-handed alpha
Helix 2
AA2
A
62 69Right-handed alpha
Helix 3
AA3
A
134 139Right-handed 310
Helix 4
AA4
A
140 144Right-handed 310
Helix 5
AA5
A
145 149Right-handed 310
Helix 6
AA6
A
151 158Right-handed alpha
Helix 7
AA7
A
206 208Right-handed 310
Helix 8
AA8
B
44 57Right-handed alpha
Helix 9
AA9
B
62 69Right-handed alpha
Helix 10
AB1
B
134 139Right-handed 310
Helix 11
AB2
B
140 144Right-handed 310
Helix 12
AB3
B
151 158Right-handed alpha
Helix 13
AB4
B
191 195Right-handed 310
Helix 14
AB5
B
206 208Right-handed 310
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There are 3 sheets in PDB entry 6LIY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
223 225first strand
Strand 2
A
209 217anti-parallel
Strand 3
A
232 236anti-parallel
Strand 4
A
58 61anti-parallel
Strand 5
A
76 85anti-parallel
Strand 6
A
91 99anti-parallel
Strand 7
A
108 116anti-parallel
Strand 8
A
125 132anti-parallel
Strand 9
A
159 170anti-parallel
Strand 10
A
179 182anti-parallel
Strand 11
A
197 205anti-parallel
Strand 12
A
209 217anti-parallel
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There are 12 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
188 189first strand
Strand 2
B
197 204anti-parallel
Strand 3
B
179 182anti-parallel
Strand 4
B
159 170anti-parallel
Strand 5
B
125 132anti-parallel
Strand 6
B
108 116anti-parallel
Strand 7
B
91 99anti-parallel
Strand 8
B
76 85anti-parallel
Strand 9
B
58 61anti-parallel
Strand 10
B
232 236anti-parallel
Strand 11
B
210 217anti-parallel
Strand 12
B
223 225anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
188 189first strand
Strand 2
B
197 204anti-parallel
Strand 3
B
210 217anti-parallel
Strand 4
B
223 225anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il