Analysis of interatomic Contacts of Structural Units in PDB entry:
6LJ3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6LJ3 entry

There are 3 chains in PDB entry 6LJ3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2THR 165
B
 ALA 2PRO 146
C
 ALA 2PHE 141
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 6LJ3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 18Right-handed alpha
Helix 2
AA2
A
72 75Right-handed 310
Helix 3
AA3
A
125 127Right-handed 310
Helix 4
AA4
A
141 145Right-handed 310
Helix 5
AA5
B
11 16Right-handed alpha
Helix 6
AA6
B
125 127Right-handed 310
Helix 7
AA7
B
141 145Right-handed 310
Helix 8
AA8
C
11 16Right-handed alpha
Helix 9
AA9
C
125 127Right-handed 310
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There are 12 sheets in PDB entry 6LJ3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 24first strand
Strand 2
A
131 134anti-parallel
Strand 3
A
3 9parallel
Strand 4
A
53 59anti-parallel
Strand 5
A
62 64anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 34first strand
Strand 2
A
119 123anti-parallel
Strand 3
A
66 70anti-parallel
Strand 4
A
88 90anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 42first strand
Strand 2
A
110 112anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 50first strand
Strand 2
A
99 104anti-parallel
Strand 3
A
81 83anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
21 24first strand
Strand 2
B
131 134anti-parallel
Strand 3
B
3 9parallel
Strand 4
B
53 59anti-parallel
Strand 5
B
62 64anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 35first strand
Strand 2
B
117 123anti-parallel
Strand 3
B
66 70anti-parallel
Strand 4
B
88 90anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
40 42first strand
Strand 2
B
110 112anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
45 50first strand
Strand 2
B
99 104anti-parallel
Strand 3
B
81 83anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
21 24first strand
Strand 2
C
131 134anti-parallel
Strand 3
C
3 9parallel
Strand 4
C
53 59anti-parallel
Strand 5
C
62 64anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
32 35first strand
Strand 2
C
117 123anti-parallel
Strand 3
C
66 70anti-parallel
Strand 4
C
88 90anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
40 42first strand
Strand 2
C
110 112anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
45 50first strand
Strand 2
C
99 104anti-parallel
Strand 3
C
81 83anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il