Analysis of interatomic Contacts of Structural Units in PDB entry:
6LJ9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6LJ9 entry

There are 2 chains in PDB entry 6LJ9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 SER 2ALA 273
A
 SER 2ALA 273
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 6LJ9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
2 7Right-handed alpha
Helix 2
AA2
B
26 33Right-handed alpha
Helix 3
AA3
B
33 39Right-handed alpha
Helix 4
AA4
B
40 44Right-handed 310
Helix 5
AA5
B
47 52Right-handed alpha
Helix 6
AA6
B
54 61Right-handed alpha
Helix 7
AA7
B
67 76Right-handed alpha
Helix 8
AA8
B
89 104Right-handed alpha
Helix 9
AA9
B
128 134Right-handed alpha
Helix 10
AB1
B
194 209Right-handed alpha
Helix 11
AB2
B
231 245Right-handed alpha
Helix 12
AB3
B
250 255Right-handed alpha
Helix 13
AB4
B
258 270Right-handed alpha
Helix 14
AB5
A
3 7Right-handed alpha
Helix 15
AB6
A
26 33Right-handed alpha
Helix 16
AB7
A
33 38Right-handed alpha
Helix 17
AB8
A
47 52Right-handed alpha
Helix 18
AB9
A
54 65Right-handed alpha
Helix 19
AC1
A
67 76Right-handed alpha
Helix 20
AC2
A
89 104Right-handed alpha
Helix 21
AC3
A
117 122Right-handed 310
Helix 22
AC4
A
128 135Right-handed alpha
Helix 23
AC5
A
160 162Right-handed 310
Helix 24
AC6
A
194 209Right-handed alpha
Helix 25
AC7
A
231 245Right-handed alpha
Helix 26
AC8
A
248 255Right-handed alpha
Helix 27
AC9
A
258 269Right-handed alpha
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There are 5 sheets in PDB entry 6LJ9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
107 109first strand
Strand 2
B
152 158parallel
Strand 3
B
169 175anti-parallel
Strand 4
B
181 186anti-parallel
Strand 5
B
215 220parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
138 141first strand
Strand 2
B
144 147anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 79first strand
Strand 2
A
270 271parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 109first strand
Strand 2
A
152 158parallel
Strand 3
A
169 175anti-parallel
Strand 4
A
181 186anti-parallel
Strand 5
A
215 220parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 141first strand
Strand 2
A
144 146anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il