Analysis of interatomic Contacts of Structural Units in PDB entry:
6LJA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6LJA entry

There is 1 chain in PDB entry 6LJA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 24PRO 864
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 6LJA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
153 161Right-handed alpha
Helix 2
AA2
A
171 183Right-handed alpha
Helix 3
AA3
A
185 199Right-handed alpha
Helix 4
AA4
A
205 210Right-handed alpha
Helix 5
AA5
A
214 218Right-handed 310
Helix 6
AA6
A
220 254Right-handed alpha
Helix 7
AA7
A
256 271Right-handed alpha
Helix 8
AA8
A
280 299Right-handed alpha
Helix 9
AA9
A
300 302Right-handed 310
Helix 10
AB1
A
303 326Right-handed alpha
Helix 11
AB2
A
328 332Right-handed 310
Helix 12
AB3
A
335 341Right-handed alpha
Helix 13
AB4
A
341 354Right-handed alpha
Helix 14
AB5
A
358 375Right-handed alpha
Helix 15
AB6
A
386 391Right-handed alpha
Helix 16
AB7
A
394 410Right-handed alpha
Helix 17
AB8
A
412 416Right-handed 310
Helix 18
AB9
A
417 430Right-handed alpha
Helix 19
AC1
A
442 446Right-handed 310
Helix 20
AC2
A
450 465Right-handed alpha
Helix 21
AC3
A
466 480Right-handed alpha
Helix 22
AC4
A
482 486Right-handed 310
Helix 23
AC5
A
489 494Right-handed alpha
Helix 24
AC6
A
495 502Right-handed alpha
Helix 25
AC7
A
512 516Right-handed 310
Helix 26
AC8
A
536 539Right-handed 310
Helix 27
AC9
A
584 591Right-handed alpha
Helix 28
AD1
A
593 597Right-handed 310
Helix 29
AD2
A
642 653Right-handed alpha
Helix 30
AD3
A
657 661Right-handed 310
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There are 7 sheets in PDB entry 6LJA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 48first strand
Strand 2
A
138 142parallel
Strand 3
A
117 126anti-parallel
Strand 4
A
83 89anti-parallel
Strand 5
A
99 103anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 48first strand
Strand 2
A
138 142parallel
Strand 3
A
117 126anti-parallel
Strand 4
A
132 134anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 57first strand
Strand 2
A
107 108anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
519 522first strand
Strand 2
A
527 531anti-parallel
Strand 3
A
541 546anti-parallel
Strand 4
A
562 567anti-parallel
Strand 5
A
570 571anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
600 602first strand
Strand 2
A
697 703anti-parallel
Strand 3
A
766 772anti-parallel
Strand 4
A
739 744anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
620 621first strand
Strand 2
A
627 632anti-parallel
Strand 3
A
667 676anti-parallel
Strand 4
A
682 695anti-parallel
Strand 5
A
775 787anti-parallel
Strand 6
A
728 735anti-parallel
Strand 7
A
716 722anti-parallel
Strand 8
A
709 713anti-parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
797 799first strand
Strand 2
A
802 805anti-parallel
Strand 3
A
808 812anti-parallel
Strand 4
A
821 826anti-parallel
Strand 5
A
831 836anti-parallel
Strand 6
A
844 850anti-parallel
Strand 7
A
853 859anti-parallel
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