Analysis of interatomic Contacts of Structural Units in PDB entry:
6LJH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6LJH entry

There is 1 chain in PDB entry 6LJH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 6HIS 382
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 6LJH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
48 56Right-handed alpha
Helix 2
AA2
A
102 108Right-handed alpha
Helix 3
AA3
A
168 176Right-handed alpha
Helix 4
AA4
A
177 189Right-handed alpha
Helix 5
AA5
A
204 217Right-handed alpha
Helix 6
AA6
A
230 239Right-handed alpha
Helix 7
AA7
A
245 249Right-handed 310
Helix 8
AA8
A
253 261Right-handed alpha
Helix 9
AA9
A
276 287Right-handed alpha
Helix 10
AB1
A
308 314Right-handed 310
Helix 11
AB2
A
322 326Right-handed 310
Helix 12
AB3
A
331 341Right-handed alpha
Helix 13
AB4
A
346 348Right-handed 310
Helix 14
AB5
A
358 366Right-handed alpha
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There are 4 sheets in PDB entry 6LJH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 16first strand
Strand 2
A
23 30anti-parallel
Strand 3
A
131 133anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 156first strand
Strand 2
A
37 45anti-parallel
Strand 3
A
71 78anti-parallel
Strand 4
A
90 93anti-parallel
Strand 5
A
160 162anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 156first strand
Strand 2
A
37 45anti-parallel
Strand 3
A
373 377anti-parallel
Strand 4
A
350 355parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
242 244first strand
Strand 2
A
221 225parallel
Strand 3
A
197 201parallel
Strand 4
A
269 272parallel
Strand 5
A
293 296parallel
Strand 6
A
317 318parallel
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