Analysis of interatomic Contacts of Structural Units in PDB entry:
6LJL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6LJL entry

There is 1 chain in PDB entry 6LJL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 24PRO 864
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 6LJL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
153 161Right-handed alpha
Helix 2
AA2
A
171 173Right-handed 310
Helix 3
AA3
A
174 183Right-handed alpha
Helix 4
AA4
A
184 187Right-handed 310
Helix 5
AA5
A
188 197Right-handed alpha
Helix 6
AA6
A
205 210Right-handed alpha
Helix 7
AA7
A
214 218Right-handed 310
Helix 8
AA8
A
220 254Right-handed alpha
Helix 9
AA9
A
256 271Right-handed alpha
Helix 10
AB1
A
280 298Right-handed alpha
Helix 11
AB2
A
299 302Right-handed 310
Helix 12
AB3
A
303 326Right-handed alpha
Helix 13
AB4
A
328 332Right-handed 310
Helix 14
AB5
A
335 341Right-handed alpha
Helix 15
AB6
A
341 354Right-handed alpha
Helix 16
AB7
A
358 375Right-handed alpha
Helix 17
AB8
A
387 393Right-handed alpha
Helix 18
AB9
A
394 410Right-handed alpha
Helix 19
AC1
A
412 416Right-handed 310
Helix 20
AC2
A
417 430Right-handed alpha
Helix 21
AC3
A
442 446Right-handed 310
Helix 22
AC4
A
450 465Right-handed alpha
Helix 23
AC5
A
466 480Right-handed alpha
Helix 24
AC6
A
482 486Right-handed 310
Helix 25
AC7
A
495 502Right-handed alpha
Helix 26
AC8
A
512 516Right-handed 310
Helix 27
AC9
A
536 539Right-handed 310
Helix 28
AD1
A
584 591Right-handed alpha
Helix 29
AD2
A
593 597Right-handed 310
Helix 30
AD3
A
642 653Right-handed alpha
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There are 7 sheets in PDB entry 6LJL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 48first strand
Strand 2
A
138 142parallel
Strand 3
A
117 126anti-parallel
Strand 4
A
83 89anti-parallel
Strand 5
A
99 103anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 48first strand
Strand 2
A
138 142parallel
Strand 3
A
117 126anti-parallel
Strand 4
A
132 134anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 57first strand
Strand 2
A
107 108anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
519 522first strand
Strand 2
A
527 531anti-parallel
Strand 3
A
541 546anti-parallel
Strand 4
A
562 567anti-parallel
Strand 5
A
570 571anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
600 602first strand
Strand 2
A
697 703anti-parallel
Strand 3
A
766 772anti-parallel
Strand 4
A
739 744anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
620 621first strand
Strand 2
A
627 632anti-parallel
Strand 3
A
667 676anti-parallel
Strand 4
A
682 695anti-parallel
Strand 5
A
775 787anti-parallel
Strand 6
A
728 735anti-parallel
Strand 7
A
716 722anti-parallel
Strand 8
A
709 713anti-parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
797 799first strand
Strand 2
A
802 805anti-parallel
Strand 3
A
808 812anti-parallel
Strand 4
A
821 826anti-parallel
Strand 5
A
831 836anti-parallel
Strand 6
A
844 850anti-parallel
Strand 7
A
853 859anti-parallel
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