Analysis of interatomic Contacts of Structural Units in PDB entry:
6LJY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6LJY entry

There is 1 chain in PDB entry 6LJY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
O
 ASN 28LYS 266
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There is 1 helix in PDB entry 6LJY. Click on helix number for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
O
257 266Right-handed alpha
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There are 3 sheets in PDB entry 6LJY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
30 34first strand
Strand 2
O
38 42anti-parallel
Strand 3
O
52 58anti-parallel
Strand 4
O
61 67anti-parallel
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There are 12 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
74 79first strand
Strand 2
O
85 90anti-parallel
Strand 3
O
96 102anti-parallel
Strand 4
O
109 116anti-parallel
Strand 5
O
119 124anti-parallel
Strand 6
O
127 131anti-parallel
Strand 7
O
137 141anti-parallel
Strand 8
O
149 155anti-parallel
Strand 9
O
158 164anti-parallel
Strand 10
O
168 175anti-parallel
Strand 11
O
178 185anti-parallel
Strand 12
O
190 196anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
205 210first strand
Strand 2
O
215 220anti-parallel
Strand 3
O
223 230anti-parallel
Strand 4
O
236 240anti-parallel
Strand 5
O
253 254anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il