Analysis of interatomic Contacts of Structural Units in PDB entry:
6LK4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6LK4 entry

There is 1 chain in PDB entry 6LK4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 3GLY 477
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 6LK4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 8Right-handed alpha
Helix 2
AA2
A
14 16Right-handed 310
Helix 3
AA3
A
29 33Right-handed 310
Helix 4
AA4
A
59 70Right-handed alpha
Helix 5
AA5
A
80 93Right-handed alpha
Helix 6
AA6
A
110 119Right-handed alpha
Helix 7
AA7
A
146 151Right-handed alpha
Helix 8
AA8
A
158 163Right-handed alpha
Helix 9
AA9
A
167 169Right-handed 310
Helix 10
AB1
A
178 190Right-handed alpha
Helix 11
AB2
A
209 217Right-handed alpha
Helix 12
AB3
A
238 252Right-handed alpha
Helix 13
AB4
A
265 277Right-handed alpha
Helix 14
AB5
A
293 304Right-handed alpha
Helix 15
AB6
A
318 325Right-handed alpha
Helix 16
AB7
A
329 344Right-handed alpha
Helix 17
AB8
A
356 366Right-handed alpha
Helix 18
AB9
A
439 458Right-handed alpha
Helix 19
AC1
A
462 470Right-handed alpha
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There are 5 sheets in PDB entry 6LK4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 20first strand
Strand 2
A
472 474anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 40first strand
Strand 2
A
43 45anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 51first strand
Strand 2
A
72 75parallel
Strand 3
A
232 235parallel
Strand 4
A
255 259parallel
Strand 5
A
285 291parallel
Strand 6
A
307 310parallel
Strand 7
A
348 351parallel
Strand 8
A
370 373parallel
Strand 9
A
49 51parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 100first strand
Strand 2
A
203 208anti-parallel
Strand 3
A
193 197anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 105first strand
Strand 2
A
130 133parallel
Strand 3
A
141 145anti-parallel
Strand 4
A
164 165anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il