Analysis of interatomic Contacts of Structural Units in PDB entry:
6LKB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6LKB entry

There are 2 chains in PDB entry 6LKB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 469VAL 628
B
 SER 469VAL 628
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 6LKB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
496 509Right-handed alpha
Helix 2
AA2
A
583 587Right-handed 310
Helix 3
AA3
A
599 608Right-handed alpha
Helix 4
AA4
B
496 509Right-handed alpha
Helix 5
AA5
B
583 587Right-handed 310
Helix 6
AA6
B
599 608Right-handed alpha
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There are 2 sheets in PDB entry 6LKB. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
519 521first strand
Strand 2
A
525 528anti-parallel
Strand 3
A
576 579anti-parallel
Strand 4
A
561 564anti-parallel
Strand 5
A
592 598anti-parallel
Strand 6
A
485 491anti-parallel
Strand 7
A
477 482anti-parallel
Strand 8
A
623 627anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
519 521first strand
Strand 2
B
525 528anti-parallel
Strand 3
B
576 579anti-parallel
Strand 4
B
561 564anti-parallel
Strand 5
B
592 598anti-parallel
Strand 6
B
485 491anti-parallel
Strand 7
B
477 482anti-parallel
Strand 8
B
623 627anti-parallel
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