Analysis of interatomic Contacts of Structural Units in PDB entry:
6LKC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6LKC entry

There are 2 chains in PDB entry 6LKC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 11ALA 542
B
 LEU 10ALA 542
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 56 helices in PDB entry 6LKC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 22Right-handed 310
Helix 2
AA2
A
25 34Right-handed alpha
Helix 3
AA3
A
79 83Right-handed 310
Helix 4
AA4
A
85 93Right-handed alpha
Helix 5
AA5
A
109 119Right-handed alpha
Helix 6
AA6
A
131 146Right-handed alpha
Helix 7
AA7
A
161 175Right-handed alpha
Helix 8
AA8
A
189 199Right-handed alpha
Helix 9
AA9
A
220 229Right-handed alpha
Helix 10
AB1
A
232 242Right-handed alpha
Helix 11
AB2
A
246 254Right-handed alpha
Helix 12
AB3
A
276 296Right-handed alpha
Helix 13
AB4
A
311 321Right-handed alpha
Helix 14
AB5
A
329 334Right-handed alpha
Helix 15
AB6
A
341 349Right-handed alpha
Helix 16
AB7
A
350 351Right-handed 310
Helix 17
AB8
A
352 354Right-handed 310
Helix 18
AB9
A
362 368Right-handed 310
Helix 19
AC1
A
379 394Right-handed alpha
Helix 20
AC2
A
396 400Right-handed 310
Helix 21
AC3
A
401 412Right-handed alpha
Helix 22
AC4
A
416 432Right-handed alpha
Helix 23
AC5
A
433 440Right-handed alpha
Helix 24
AC6
A
442 465Right-handed alpha
Helix 25
AC7
A
469 473Right-handed 310
Helix 26
AC8
A
478 489Right-handed alpha
Helix 27
AC9
A
491 499Right-handed 310
Helix 28
AD1
A
500 524Right-handed alpha
Helix 29
AD2
A
529 533Right-handed 310
Helix 30
AD3
B
18 22Right-handed 310
Helix 31
AD4
B
25 34Right-handed alpha
Helix 32
AD5
B
79 83Right-handed 310
Helix 33
AD6
B
85 93Right-handed alpha
Helix 34
AD7
B
109 119Right-handed alpha
Helix 35
AD8
B
131 146Right-handed alpha
Helix 36
AD9
B
161 175Right-handed alpha
Helix 37
AE1
B
189 198Right-handed alpha
Helix 38
AE2
B
220 229Right-handed alpha
Helix 39
AE3
B
232 238Right-handed alpha
Helix 40
AE4
B
246 254Right-handed alpha
Helix 41
AE5
B
276 296Right-handed alpha
Helix 42
AE6
B
311 321Right-handed alpha
Helix 43
AE7
B
329 334Right-handed alpha
Helix 44
AE8
B
341 350Right-handed alpha
Helix 45
AE9
B
364 368Right-handed 310
Helix 46
AF1
B
379 394Right-handed alpha
Helix 47
AF2
B
396 400Right-handed 310
Helix 48
AF3
B
401 412Right-handed alpha
Helix 49
AF4
B
416 432Right-handed alpha
Helix 50
AF5
B
433 440Right-handed alpha
Helix 51
AF6
B
442 465Right-handed alpha
Helix 52
AF7
B
469 473Right-handed 310
Helix 53
AF8
B
478 488Right-handed alpha
Helix 54
AF9
B
491 499Right-handed 310
Helix 55
AG1
B
500 524Right-handed alpha
Helix 56
AG2
B
529 533Right-handed 310
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There are 10 sheets in PDB entry 6LKC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 58first strand
Strand 2
A
15 18anti-parallel
Strand 3
A
68 70anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 53first strand
Strand 2
A
40 45anti-parallel
Strand 3
A
73 75anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 100first strand
Strand 2
A
122 125parallel
Strand 3
A
152 156parallel
Strand 4
A
179 183parallel
Strand 5
A
213 218parallel
Strand 6
A
261 265parallel
Strand 7
A
302 306parallel
Strand 8
A
326 328parallel
Strand 9
A
98 100parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
200 202first strand
Strand 2
A
208 210anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
270 271first strand
Strand 2
A
370 374anti-parallel
Strand 3
A
356 360anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 58first strand
Strand 2
B
15 17anti-parallel
Strand 3
B
69 70anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 53first strand
Strand 2
B
40 45anti-parallel
Strand 3
B
73 75anti-parallel
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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
98 100first strand
Strand 2
B
122 125parallel
Strand 3
B
152 156parallel
Strand 4
B
179 183parallel
Strand 5
B
213 218parallel
Strand 6
B
261 265parallel
Strand 7
B
302 306parallel
Strand 8
B
326 328parallel
Strand 9
B
98 100parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
200 202first strand
Strand 2
B
208 210anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
270 271first strand
Strand 2
B
370 374anti-parallel
Strand 3
B
356 360anti-parallel
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