Analysis of interatomic Contacts of Structural Units in PDB entry:
6LKD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6LKD entry

There are 2 chains in PDB entry 6LKD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 6HIS 443
B
 THR 6ALA 434
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 6LKD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 29Right-handed alpha
Helix 2
AA2
A
59 68Right-handed alpha
Helix 3
AA3
A
71 78Right-handed alpha
Helix 4
AA4
A
111 125Right-handed alpha
Helix 5
AA5
A
171 178Right-handed alpha
Helix 6
AA6
A
241 247Right-handed alpha
Helix 7
AA7
A
249 261Right-handed alpha
Helix 8
AA8
A
263 268Right-handed alpha
Helix 9
AA9
A
271 278Right-handed alpha
Helix 10
AB1
A
303 306Right-handed 310
Helix 11
AB2
A
315 334Right-handed alpha
Helix 12
AB3
A
337 370Right-handed alpha
Helix 13
AB4
A
372 390Right-handed alpha
Helix 14
AB5
A
396 403Right-handed alpha
Helix 15
AB6
A
407 443Right-handed alpha
Helix 16
AB7
B
17 29Right-handed alpha
Helix 17
AB8
B
59 69Right-handed alpha
Helix 18
AB9
B
71 78Right-handed alpha
Helix 19
AC1
B
111 125Right-handed alpha
Helix 20
AC2
B
171 178Right-handed alpha
Helix 21
AC3
B
241 246Right-handed alpha
Helix 22
AC4
B
249 261Right-handed alpha
Helix 23
AC5
B
263 268Right-handed alpha
Helix 24
AC6
B
271 278Right-handed alpha
Helix 25
AC7
B
303 305Right-handed 310
Helix 26
AC8
B
315 334Right-handed alpha
Helix 27
AC9
B
337 370Right-handed alpha
Helix 28
AD1
B
374 390Right-handed alpha
Helix 29
AD2
B
396 404Right-handed alpha
Helix 30
AD3
B
407 434Right-handed alpha
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There are 9 sheets in PDB entry 6LKD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 132first strand
Strand 2
A
33 38parallel
Strand 3
A
10 14parallel
Strand 4
A
162 165parallel
Strand 5
A
299 301parallel
Strand 6
A
294 295anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 58first strand
Strand 2
A
106 110anti-parallel
Strand 3
A
80 82anti-parallel
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There are 12 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 98first strand
Strand 2
A
84 88anti-parallel
Strand 3
A
212 217parallel
Strand 4
A
221 227anti-parallel
Strand 5
A
233 240anti-parallel
Strand 6
A
184 199anti-parallel
Strand 7
B
184 199anti-parallel
Strand 8
B
233 240anti-parallel
Strand 9
B
221 227anti-parallel
Strand 10
B
212 217anti-parallel
Strand 11
B
84 88parallel
Strand 12
B
94 98anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
283 291first strand
Strand 2
A
184 199anti-parallel
Strand 3
B
184 199anti-parallel
Strand 4
B
283 291anti-parallel
Strand 5
B
307 308anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 202first strand
Strand 2
A
205 206anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
128 132first strand
Strand 2
B
33 38parallel
Strand 3
B
10 14parallel
Strand 4
B
162 165parallel
Strand 5
B
299 301parallel
Strand 6
B
294 295anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 58first strand
Strand 2
B
106 110anti-parallel
Strand 3
B
80 82anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
135 138first strand
Strand 2
B
145 148anti-parallel
Strand 3
B
156 158anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
201 202first strand
Strand 2
B
205 206anti-parallel
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