Analysis of interatomic Contacts of Structural Units in PDB entry:
6LKI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6LKI entry

There are 2 chains in PDB entry 6LKI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 29GLN 322
B
 THR 45ASP 214
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 6LKI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
38 54Right-handed alpha
Helix 2
AA2
A
63 73Right-handed alpha
Helix 3
AA3
A
87 92Right-handed alpha
Helix 4
AA4
A
94 96Right-handed 310
Helix 5
AA5
A
103 109Right-handed 310
Helix 6
AA6
A
110 114Right-handed 310
Helix 7
AA7
A
134 138Right-handed alpha
Helix 8
AA8
A
146 154Right-handed 310
Helix 9
AA9
A
165 180Right-handed alpha
Helix 10
AB1
A
181 190Right-handed alpha
Helix 11
AB2
A
197 207Right-handed alpha
Helix 12
AB3
A
217 225Right-handed alpha
Helix 13
AB4
A
257 266Right-handed alpha
Helix 14
AB5
A
267 279Right-handed alpha
Helix 15
AB6
A
297 301Right-handed 310
Helix 16
AB7
A
305 309Right-handed 310
Helix 17
AB8
A
313 322Right-handed alpha
Helix 18
AB9
B
46 76Right-handed alpha
Helix 19
AC1
B
82 100Right-handed alpha
Helix 20
AC2
B
123 127Right-handed 310
Helix 21
AC3
B
151 161Right-handed alpha
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There are 5 sheets in PDB entry 6LKI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 61first strand
Strand 2
A
31 35parallel
Strand 3
A
82 84parallel
Strand 4
A
241 249anti-parallel
Strand 5
A
121 133anti-parallel
Strand 6
A
212 216anti-parallel
Strand 7
A
157 160parallel
Strand 8
A
193 195parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 99first strand
Strand 2
A
241 249anti-parallel
Strand 3
A
121 133anti-parallel
Strand 4
A
281 282anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
230 233first strand
Strand 2
A
121 133anti-parallel
Strand 3
A
281 282anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
113 116first strand
Strand 2
B
103 110anti-parallel
Strand 3
B
141 150anti-parallel
Strand 4
B
128 136anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
174 177first strand
Strand 2
B
164 169anti-parallel
Strand 3
B
207 213anti-parallel
Strand 4
B
196 201anti-parallel
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