Analysis of interatomic Contacts of Structural Units in PDB entry:
6LKN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6LKN entry

There are 3 chains in PDB entry 6LKN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 28	THR 408
A	LYS 410	ARG 1091
C	ARG 27	GLY 203

There are214 helices in PDB entry 6LKN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	55	64	Right-handed alpha
Helix 2	AA2	A	66	79	Right-handed alpha
Helix 3	AA3	A	88	122	Right-handed alpha
Helix 4	AA4	A	166	170	Right-handed 310
Helix 5	AA5	A	194	201	Right-handed alpha
Helix 6	AA6	A	261	264	Right-handed 310
Helix 7	AA7	A	265	273	Right-handed alpha
Helix 8	AA8	A	274	276	Right-handed 310
Helix 9	AA9	A	283	315	Right-handed alpha
Helix 10	AB1	A	328	335	Right-handed alpha
Helix 11	AB2	A	337	352	Right-handed alpha
Helix 12	AB3	A	358	370	Right-handed alpha
Helix 13	AB4	A	371	376	Right-handed alpha
Helix 14	AB5	A	399	403	Right-handed 310
Helix 15	AB6	A	440	445	Right-handed alpha
Helix 16	AB7	A	458	468	Right-handed alpha
Helix 17	AB8	A	495	508	Right-handed alpha
Helix 18	AB9	A	578	591	Right-handed alpha
Helix 19	AC1	A	604	620	Right-handed alpha
Helix 20	AC2	A	624	637	Right-handed alpha
Helix 21	AC3	A	655	667	Right-handed alpha
Helix 22	AC4	A	677	688	Right-handed alpha
Helix 23	AC5	A	710	713	Right-handed 310
Helix 24	AC6	A	714	719	Right-handed alpha
Helix 25	AC7	A	719	730	Right-handed alpha
Helix 26	AC8	A	753	761	Right-handed alpha
Helix 27	AC9	A	771	781	Right-handed alpha
Helix 28	AD1	A	791	803	Right-handed alpha
Helix 29	AD2	A	820	824	Right-handed 310
Helix 30	AD3	A	839	845	Right-handed alpha
Helix 31	AD4	A	854	861	Right-handed alpha
Helix 32	AD5	A	861	891	Right-handed alpha
Helix 33	AD6	A	892	894	Right-handed 310
Helix 34	AD7	A	904	926	Right-handed alpha
Helix 35	AD8	A	931	937	Right-handed alpha
Helix 36	AD9	A	942	947	Right-handed alpha
Helix 37	AE1	A	948	951	Right-handed 310
Helix 38	AE2	A	952	978	Right-handed alpha
Helix 39	AE3	A	991	1015	Right-handed alpha
Helix 40	AE4	A	1021	1041	Right-handed alpha
Helix 41	AE5	A	1055	1062	Right-handed alpha
Helix 42	AE6	A	1063	1090	Right-handed alpha
Helix 43	AE7	C	32	36	Right-handed 310
Helix 44	AE8	C	46	75	Right-handed alpha
Helix 45	AE9	C	91	95	Right-handed 310
Helix 46	AF1	C	131	136	Right-handed alpha
Helix 47	AF2	C	139	145	Right-handed alpha
Helix 48	AF3	C	146	152	Right-handed alpha
Helix 49	AF4	C	172	177	Right-handed alpha
Helix 50	AF5	C	206	212	Right-handed alpha
Helix 51	AF6	C	223	227	Right-handed 310
Helix 52	AF7	C	239	243	Right-handed 310
Helix 53	AF8	C	246	250	Right-handed 310
Helix 54	AF9	C	254	261	Right-handed alpha
Helix 55	AG1	C	301	305	Right-handed 310
Helix 56	AG2	C	323	348	Right-handed alpha
Helix 57	AG3	E	54	64	Right-handed alpha
Helix 58	AG4	E	66	80	Right-handed alpha
Helix 59	AG5	E	94	122	Right-handed alpha
Helix 60	AG6	E	166	170	Right-handed 310
Helix 61	AG7	E	175	180	Right-handed alpha
Helix 62	AG8	E	201	206	Right-handed 310
Helix 63	AG9	E	262	266	Right-handed 310
Helix 64	AH1	E	268	272	Right-handed 310
Helix 65	AH2	E	284	314	Right-handed alpha
Helix 66	AH3	E	328	335	Right-handed alpha
Helix 67	AH4	E	335	351	Right-handed alpha
Helix 68	AH5	E	352	355	Right-handed 310
Helix 69	AH6	E	356	357	Right-handed 310
Helix 70	AH7	E	358	371	Right-handed alpha
Helix 71	AH8	E	371	376	Right-handed alpha
Helix 72	AH9	E	449	451	Right-handed 310
Helix 73	AI1	E	452	468	Right-handed alpha
Helix 74	AI2	E	498	503	Right-handed alpha
Helix 75	AI3	E	565	570	Right-handed alpha
Helix 76	AI4	E	577	590	Right-handed alpha
Helix 77	AI5	E	608	620	Right-handed 310
Helix 78	AI6	E	628	636	Right-handed alpha
Helix 79	AI7	E	655	666	Right-handed alpha
Helix 80	AI8	E	677	688	Right-handed alpha
Helix 81	AI9	E	713	715	Right-handed 310
Helix 82	AJ1	E	716	728	Right-handed alpha
Helix 83	AJ2	E	743	747	Right-handed 310
Helix 84	AJ3	E	754	762	Right-handed alpha
Helix 85	AJ4	E	770	781	Right-handed alpha
Helix 86	AJ5	E	791	804	Right-handed alpha
Helix 87	AJ6	E	817	827	Right-handed alpha
Helix 88	AJ7	E	838	843	Right-handed alpha
Helix 89	AJ8	E	854	861	Right-handed alpha
Helix 90	AJ9	E	861	884	Right-handed alpha
Helix 91	AK1	E	884	893	Right-handed alpha
Helix 92	AK2	E	904	915	Right-handed alpha
Helix 93	AK3	E	916	927	Right-handed alpha
Helix 94	AK4	E	931	936	Right-handed alpha
Helix 95	AK5	E	939	947	Right-handed alpha
Helix 96	AK6	E	954	959	Right-handed alpha
Helix 97	AK7	E	961	978	Right-handed alpha
Helix 98	AK8	E	979	981	Right-handed 310
Helix 99	AK9	E	991	1015	Right-handed alpha
Helix 100	AL1	E	1022	1041	Right-handed alpha
Helix 101	AL2	E	1043	1048	Right-handed alpha
Helix 102	AL3	E	1055	1062	Right-handed alpha
Helix 103	AL4	E	1063	1090	Right-handed alpha
Helix 104	AL5	F	32	36	Right-handed 310
Helix 105	AL6	F	46	75	Right-handed alpha
Helix 106	AL7	F	89	94	Right-handed 310
Helix 107	AL8	F	131	136	Right-handed alpha
Helix 108	AL9	F	139	144	Right-handed alpha
Helix 109	AM1	F	146	152	Right-handed alpha
Helix 110	AM2	F	206	212	Right-handed alpha
Helix 111	AM3	F	222	227	Right-handed alpha
Helix 112	AM4	F	239	243	Right-handed 310
Helix 113	AM5	F	254	262	Right-handed alpha
Helix 114	AM6	F	301	305	Right-handed 310
Helix 115	AM7	F	323	348	Right-handed alpha
Helix 116	AM8	I	55	64	Right-handed alpha
Helix 117	AM9	I	66	82	Right-handed alpha
Helix 118	AN1	I	88	122	Right-handed alpha
Helix 119	AN2	I	166	170	Right-handed 310
Helix 120	AN3	I	201	207	Right-handed alpha
Helix 121	AN4	I	261	273	Right-handed alpha
Helix 122	AN5	I	284	313	Right-handed alpha
Helix 123	AN6	I	329	334	Right-handed alpha
Helix 124	AN7	I	335	352	Right-handed alpha
Helix 125	AN8	I	353	355	Right-handed 310
Helix 126	AN9	I	357	376	Right-handed alpha
Helix 127	AO1	I	455	459	Right-handed 310
Helix 128	AO2	I	460	466	Right-handed alpha
Helix 129	AO3	I	497	501	Right-handed 310
Helix 130	AO4	I	502	507	Right-handed 310
Helix 131	AO5	I	581	592	Right-handed alpha
Helix 132	AO6	I	608	618	Right-handed alpha
Helix 133	AO7	I	619	622	Right-handed 310
Helix 134	AO8	I	628	635	Right-handed alpha
Helix 135	AO9	I	655	667	Right-handed alpha
Helix 136	AP1	I	677	686	Right-handed alpha
Helix 137	AP2	I	710	715	Right-handed alpha
Helix 138	AP3	I	717	728	Right-handed alpha
Helix 139	AP4	I	742	747	Right-handed alpha
Helix 140	AP5	I	753	762	Right-handed alpha
Helix 141	AP6	I	771	781	Right-handed alpha
Helix 142	AP7	I	791	805	Right-handed alpha
Helix 143	AP8	I	820	827	Right-handed alpha
Helix 144	AP9	I	839	844	Right-handed alpha
Helix 145	AQ1	I	854	895	Right-handed alpha
Helix 146	AQ2	I	904	915	Right-handed alpha
Helix 147	AQ3	I	916	927	Right-handed alpha
Helix 148	AQ4	I	931	938	Right-handed alpha
Helix 149	AQ5	I	939	947	Right-handed alpha
Helix 150	AQ6	I	952	978	Right-handed alpha
Helix 151	AQ7	I	991	1015	Right-handed alpha
Helix 152	AQ8	I	1021	1040	Right-handed alpha
Helix 153	AQ9	I	1046	1050	Right-handed 310
Helix 154	AR1	I	1055	1062	Right-handed alpha
Helix 155	AR2	I	1064	1090	Right-handed alpha
Helix 156	AR3	J	50	74	Right-handed alpha
Helix 157	AR4	J	89	94	Right-handed 310
Helix 158	AR5	J	139	144	Right-handed alpha
Helix 159	AR6	J	146	152	Right-handed alpha
Helix 160	AR7	J	157	161	Right-handed 310
Helix 161	AR8	J	174	178	Right-handed 310
Helix 162	AR9	J	206	212	Right-handed alpha
Helix 163	AS1	J	254	262	Right-handed alpha
Helix 164	AS2	J	301	305	Right-handed 310
Helix 165	AS3	J	322	348	Right-handed alpha
Helix 166	AS4	M	55	64	Right-handed alpha
Helix 167	AS5	M	66	78	Right-handed alpha
Helix 168	AS6	M	88	93	Right-handed alpha
Helix 169	AS7	M	94	97	Right-handed 310
Helix 170	AS8	M	98	122	Right-handed alpha
Helix 171	AS9	M	166	170	Right-handed 310
Helix 172	AT1	M	196	200	Right-handed 310
Helix 173	AT2	M	201	205	Right-handed 310
Helix 174	AT3	M	262	270	Right-handed alpha
Helix 175	AT4	M	282	311	Right-handed alpha
Helix 176	AT5	M	327	335	Right-handed alpha
Helix 177	AT6	M	337	351	Right-handed alpha
Helix 178	AT7	M	352	355	Right-handed 310
Helix 179	AT8	M	357	359	Right-handed 310
Helix 180	AT9	M	360	370	Right-handed alpha
Helix 181	AU1	M	437	441	Right-handed 310
Helix 182	AU2	M	454	469	Right-handed alpha
Helix 183	AU3	M	498	505	Right-handed alpha
Helix 184	AU4	M	577	590	Right-handed alpha
Helix 185	AU5	M	610	615	Right-handed alpha
Helix 186	AU6	M	628	638	Right-handed alpha
Helix 187	AU7	M	656	667	Right-handed alpha
Helix 188	AU8	M	677	688	Right-handed alpha
Helix 189	AU9	M	707	712	Right-handed alpha
Helix 190	AV1	M	713	728	Right-handed alpha
Helix 191	AV2	M	740	745	Right-handed alpha
Helix 192	AV3	M	753	762	Right-handed alpha
Helix 193	AV4	M	771	781	Right-handed alpha
Helix 194	AV5	M	793	805	Right-handed alpha
Helix 195	AV6	M	820	827	Right-handed alpha
Helix 196	AV7	M	839	845	Right-handed alpha
Helix 197	AV8	M	854	892	Right-handed alpha
Helix 198	AV9	M	904	924	Right-handed alpha
Helix 199	AW1	M	931	938	Right-handed alpha
Helix 200	AW2	M	952	978	Right-handed alpha
Helix 201	AW3	M	993	1015	Right-handed alpha
Helix 202	AW4	M	1022	1035	Right-handed alpha
Helix 203	AW5	M	1035	1040	Right-handed alpha
Helix 204	AW6	M	1055	1061	Right-handed alpha
Helix 205	AW7	M	1065	1090	Right-handed alpha
Helix 206	AW8	N	46	74	Right-handed alpha
Helix 207	AW9	N	89	95	Right-handed 310
Helix 208	AX1	N	131	136	Right-handed alpha
Helix 209	AX2	N	139	144	Right-handed alpha
Helix 210	AX3	N	207	212	Right-handed alpha
Helix 211	AX4	N	246	250	Right-handed 310
Helix 212	AX5	N	254	262	Right-handed alpha
Helix 213	AX6	N	301	305	Right-handed 310
Helix 214	AX7	N	323	348	Right-handed alpha

There are 34 sheets in PDB entry 6LKN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	124	125	first strand
Strand 2	A	136	137	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	147	150	first strand
Strand 2	A	256	260	anti-parallel
Strand 3	A	160	164	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	185	186	first strand
Strand 2	A	172	174	anti-parallel
Strand 3	A	250	252	anti-parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	390	391	first strand
Strand 2	A	847	848	anti-parallel
Strand 3	A	829	832	parallel
Strand 4	A	811	815	parallel
Strand 5	A	405	408	parallel
Strand 6	A	669	673	parallel
Strand 7	A	785	788	parallel
Strand 8	A	749	752	parallel
Strand 9	A	698	700	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	420	421	first strand
Strand 2	A	648	649	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	533	537	first strand
Strand 2	A	548	552	anti-parallel
Strand 3	A	558	562	anti-parallel
Strand 4	A	596	602	anti-parallel
Strand 5	A	641	646	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	81	first strand
Strand 2	C	308	313	anti-parallel
Strand 3	C	119	124	anti-parallel
Strand 4	C	269	272	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	102	105	first strand
Strand 2	C	289	297	anti-parallel
Strand 3	C	108	110	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	102	105	first strand
Strand 2	C	289	297	anti-parallel
Strand 3	C	183	187	anti-parallel
Strand 4	C	195	196	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	148	149	first strand
Strand 2	E	257	258	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	172	174	first strand
Strand 2	E	250	252	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	210	211	first strand
Strand 2	E	221	224	anti-parallel
Strand 3	E	231	233	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	390	391	first strand
Strand 2	E	847	849	anti-parallel
Strand 3	E	831	833	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	669	672	first strand
Strand 2	E	405	408	parallel
Strand 3	E	811	813	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	424	425	first strand
Strand 2	E	645	646	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	750	752	first strand
Strand 2	E	786	788	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	77	81	first strand
Strand 2	F	308	314	anti-parallel
Strand 3	F	118	124	anti-parallel
Strand 4	F	269	276	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	104	105	first strand
Strand 2	F	293	295	anti-parallel
Strand 3	F	183	187	anti-parallel
Strand 4	F	195	196	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	108	109	first strand
Strand 2	F	290	291	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	172	175	first strand
Strand 2	I	249	252	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	209	210	first strand
Strand 2	I	224	225	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	390	391	first strand
Strand 2	I	847	848	anti-parallel
Strand 3	I	831	832	parallel
Strand 4	I	811	815	parallel
Strand 5	I	405	408	parallel
Strand 6	I	669	672	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	594	598	first strand
Strand 2	I	644	648	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	751	752	first strand
Strand 2	I	787	788	parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	77	81	first strand
Strand 2	J	308	313	anti-parallel
Strand 3	J	119	124	anti-parallel
Strand 4	J	269	275	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	104	105	first strand
Strand 2	J	294	295	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	186	188	first strand
Strand 2	J	290	292	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	172	174	first strand
Strand 2	M	250	252	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	210	211	first strand
Strand 2	M	223	224	anti-parallel

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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	750	752	first strand
Strand 2	M	786	788	parallel
Strand 3	M	669	673	parallel
Strand 4	M	405	408	parallel
Strand 5	M	811	815	parallel
Strand 6	M	831	832	parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	424	426	first strand
Strand 2	M	643	646	anti-parallel
Strand 3	M	596	601	anti-parallel
Strand 4	M	560	565	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	77	81	first strand
Strand 2	N	309	313	anti-parallel
Strand 3	N	119	124	anti-parallel
Strand 4	N	269	275	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	103	105	first strand
Strand 2	N	290	296	anti-parallel
Strand 3	N	108	109	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	103	105	first strand
Strand 2	N	290	296	anti-parallel
Strand 3	N	183	188	anti-parallel
Strand 4	N	195	196	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6LKN

Analysis of interatomic Contacts of Structural Units in PDB entry:
6LKN