Analysis of interatomic Contacts of Structural Units in PDB entry:
6LL8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6LL8 entry

There are 2 chains in PDB entry 6LL8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2LYS 307
B
 SER 2LYS 307
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 6LL8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 29Right-handed alpha
Helix 2
AA2
A
42 53Right-handed alpha
Helix 3
AA3
A
75 79Right-handed 310
Helix 4
AA4
A
82 86Right-handed 310
Helix 5
AA5
A
115 128Right-handed alpha
Helix 6
AA6
A
132 147Right-handed alpha
Helix 7
AA7
A
156 171Right-handed alpha
Helix 8
AA8
A
174 187Right-handed alpha
Helix 9
AA9
A
193 199Right-handed alpha
Helix 10
AB1
A
221 226Right-handed 310
Helix 11
AB2
A
228 243Right-handed alpha
Helix 12
AB3
A
270 277Right-handed alpha
Helix 13
AB4
A
292 297Right-handed alpha
Helix 14
AB5
A
297 307Right-handed alpha
Helix 15
AB6
B
12 29Right-handed alpha
Helix 16
AB7
B
42 53Right-handed alpha
Helix 17
AB8
B
75 79Right-handed 310
Helix 18
AB9
B
82 86Right-handed 310
Helix 19
AC1
B
115 128Right-handed alpha
Helix 20
AC2
B
132 147Right-handed alpha
Helix 21
AC3
B
156 171Right-handed alpha
Helix 22
AC4
B
174 187Right-handed alpha
Helix 23
AC5
B
193 199Right-handed alpha
Helix 24
AC6
B
221 226Right-handed 310
Helix 25
AC7
B
228 243Right-handed alpha
Helix 26
AC8
B
270 277Right-handed alpha
Helix 27
AC9
B
292 297Right-handed alpha
Helix 28
AD1
B
297 307Right-handed alpha
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There are 3 sheets in PDB entry 6LL8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 59first strand
Strand 2
A
33 37parallel
Strand 3
A
3 6parallel
Strand 4
A
67 71parallel
Strand 5
A
87 93parallel
Strand 6
A
107 110parallel
Strand 7
B
107 110anti-parallel
Strand 8
B
87 93parallel
Strand 9
B
67 71parallel
Strand 10
B
3 6parallel
Strand 11
B
33 37parallel
Strand 12
B
58 59parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 207first strand
Strand 2
A
210 219anti-parallel
Strand 3
A
247 254parallel
Strand 4
A
259 266anti-parallel
Strand 5
A
284 288anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
202 207first strand
Strand 2
B
210 219anti-parallel
Strand 3
B
247 254parallel
Strand 4
B
259 266anti-parallel
Strand 5
B
284 288anti-parallel
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