Analysis of interatomic Contacts of Structural Units in PDB entry:
6LL9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6LL9 entry

There are 2 chains in PDB entry 6LL9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 4ARG 326
B
 ASN 3LYS 327
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 6LL9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 32Right-handed alpha
Helix 2
AA2
A
89 97Right-handed alpha
Helix 3
AA3
A
98 100Right-handed 310
Helix 4
AA4
A
106 115Right-handed alpha
Helix 5
AA5
A
115 126Right-handed alpha
Helix 6
AA6
A
176 184Right-handed alpha
Helix 7
AA7
A
253 271Right-handed alpha
Helix 8
AA8
A
304 314Right-handed alpha
Helix 9
AA9
A
317 325Right-handed alpha
Helix 10
AB1
B
16 32Right-handed alpha
Helix 11
AB2
B
89 98Right-handed alpha
Helix 12
AB3
B
106 115Right-handed alpha
Helix 13
AB4
B
115 126Right-handed alpha
Helix 14
AB5
B
253 271Right-handed alpha
Helix 15
AB6
B
304 313Right-handed alpha
Helix 16
AB7
B
316 326Right-handed alpha
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There are 8 sheets in PDB entry 6LL9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 51first strand
Strand 2
A
39 43anti-parallel
Strand 3
A
6 9parallel
Strand 4
A
76 79parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 59first strand
Strand 2
A
64 67anti-parallel
Strand 3
A
70 73anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 161first strand
Strand 2
A
193 196anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 217first strand
Strand 2
A
203 211anti-parallel
Strand 3
A
221 222anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 217first strand
Strand 2
A
203 211anti-parallel
Strand 3
A
276 283anti-parallel
Strand 4
A
289 295anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
72 73first strand
Strand 2
B
64 66anti-parallel
Strand 3
B
56 59anti-parallel
Strand 4
B
49 51anti-parallel
Strand 5
B
42 43anti-parallel
Strand 6
B
6 10parallel
Strand 7
B
76 79parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
214 217first strand
Strand 2
B
202 211anti-parallel
Strand 3
B
221 222anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
214 217first strand
Strand 2
B
202 211anti-parallel
Strand 3
B
276 283anti-parallel
Strand 4
B
289 295anti-parallel
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