Analysis of interatomic Contacts of Structural Units in PDB entry:
6LLA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6LLA entry

There are 4 chains in PDB entry 6LLA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	PRO 362
B	GLY 0	PRO 362
C	GLY 0	PRO 362
D	MET 1	CYS 223

There are 70 helices in PDB entry 6LLA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	20	24	Right-handed 310
Helix 2	AA2	A	45	60	Right-handed alpha
Helix 3	AA3	A	72	76	Right-handed 310
Helix 4	AA4	A	77	91	Right-handed alpha
Helix 5	AA5	A	104	118	Right-handed alpha
Helix 6	AA6	A	119	121	Right-handed 310
Helix 7	AA7	A	130	136	Right-handed alpha
Helix 8	AA8	A	168	173	Right-handed 310
Helix 9	AA9	A	174	193	Right-handed alpha
Helix 10	AB1	A	193	209	Right-handed alpha
Helix 11	AB2	A	211	233	Right-handed alpha
Helix 12	AB3	A	240	246	Right-handed 310
Helix 13	AB4	A	247	259	Right-handed alpha
Helix 14	AB5	A	264	283	Right-handed alpha
Helix 15	AB6	A	287	301	Right-handed alpha
Helix 16	AB7	A	312	321	Right-handed alpha
Helix 17	AB8	A	349	359	Right-handed alpha
Helix 18	AB9	B	20	24	Right-handed 310
Helix 19	AC1	B	45	60	Right-handed alpha
Helix 20	AC2	B	72	76	Right-handed 310
Helix 21	AC3	B	77	91	Right-handed alpha
Helix 22	AC4	B	104	118	Right-handed alpha
Helix 23	AC5	B	119	121	Right-handed 310
Helix 24	AC6	B	130	136	Right-handed alpha
Helix 25	AC7	B	168	173	Right-handed 310
Helix 26	AC8	B	174	192	Right-handed alpha
Helix 27	AC9	B	193	209	Right-handed alpha
Helix 28	AD1	B	211	233	Right-handed alpha
Helix 29	AD2	B	240	246	Right-handed 310
Helix 30	AD3	B	247	259	Right-handed alpha
Helix 31	AD4	B	264	283	Right-handed alpha
Helix 32	AD5	B	287	301	Right-handed alpha
Helix 33	AD6	B	312	321	Right-handed alpha
Helix 34	AD7	B	349	359	Right-handed alpha
Helix 35	AD8	C	20	24	Right-handed 310
Helix 36	AD9	C	45	60	Right-handed alpha
Helix 37	AE1	C	72	76	Right-handed 310
Helix 38	AE2	C	77	91	Right-handed alpha
Helix 39	AE3	C	104	118	Right-handed alpha
Helix 40	AE4	C	119	121	Right-handed 310
Helix 41	AE5	C	130	136	Right-handed alpha
Helix 42	AE6	C	168	173	Right-handed 310
Helix 43	AE7	C	174	192	Right-handed alpha
Helix 44	AE8	C	193	209	Right-handed alpha
Helix 45	AE9	C	211	233	Right-handed alpha
Helix 46	AF1	C	240	246	Right-handed 310
Helix 47	AF2	C	247	259	Right-handed alpha
Helix 48	AF3	C	264	283	Right-handed alpha
Helix 49	AF4	C	287	301	Right-handed alpha
Helix 50	AF5	C	312	317	Right-handed alpha
Helix 51	AF6	C	318	320	Right-handed 310
Helix 52	AF7	C	349	359	Right-handed alpha
Helix 53	AF8	D	20	24	Right-handed 310
Helix 54	AF9	D	45	60	Right-handed alpha
Helix 55	AG1	D	72	76	Right-handed 310
Helix 56	AG2	D	77	91	Right-handed alpha
Helix 57	AG3	D	104	118	Right-handed alpha
Helix 58	AG4	D	119	121	Right-handed 310
Helix 59	AG5	D	130	136	Right-handed alpha
Helix 60	AG6	D	168	173	Right-handed 310
Helix 61	AG7	D	174	192	Right-handed alpha
Helix 62	AG8	D	193	209	Right-handed alpha
Helix 63	AG9	D	211	233	Right-handed alpha
Helix 64	AH1	D	240	246	Right-handed 310
Helix 65	AH2	D	247	259	Right-handed alpha
Helix 66	AH3	D	264	283	Right-handed alpha
Helix 67	AH4	D	287	301	Right-handed alpha
Helix 68	AH5	D	312	317	Right-handed alpha
Helix 69	AH6	D	318	320	Right-handed 310
Helix 70	AH7	D	349	359	Right-handed alpha

There are 12 sheets in PDB entry 6LLA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	8	first strand
Strand 2	A	11	18	anti-parallel
Strand 3	A	162	166	parallel
Strand 4	A	123	128	parallel
Strand 5	A	98	103	parallel
Strand 6	A	36	42	parallel
Strand 7	A	63	69	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	142	147	first strand
Strand 2	A	150	157	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	333	338	first strand
Strand 2	A	341	345	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	8	first strand
Strand 2	B	11	18	anti-parallel
Strand 3	B	162	166	parallel
Strand 4	B	123	128	parallel
Strand 5	B	98	103	parallel
Strand 6	B	36	42	parallel
Strand 7	B	63	69	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	142	147	first strand
Strand 2	B	150	157	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	333	338	first strand
Strand 2	B	341	345	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	8	first strand
Strand 2	C	11	18	anti-parallel
Strand 3	C	162	166	parallel
Strand 4	C	123	128	parallel
Strand 5	C	98	103	parallel
Strand 6	C	36	42	parallel
Strand 7	C	63	69	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	142	147	first strand
Strand 2	C	150	157	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	331	338	first strand
Strand 2	C	341	348	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2	8	first strand
Strand 2	D	11	18	anti-parallel
Strand 3	D	162	166	parallel
Strand 4	D	123	128	parallel
Strand 5	D	98	103	parallel
Strand 6	D	36	42	parallel
Strand 7	D	63	69	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	142	147	first strand
Strand 2	D	150	157	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	331	338	first strand
Strand 2	D	341	348	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6LLA

Analysis of interatomic Contacts of Structural Units in PDB entry:
6LLA