Analysis of interatomic Contacts of Structural Units in PDB entry:
6LLM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6LLM entry

There is 1 chain in PDB entry 6LLM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2HIS 389
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 6LLM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 11Right-handed alpha
Helix 2
AA2
A
12 14Right-handed 310
Helix 3
AA3
A
15 21Right-handed alpha
Helix 4
AA4
A
36 38Right-handed 310
Helix 5
AA5
A
75 79Right-handed 310
Helix 6
AA6
A
144 149Right-handed 310
Helix 7
AA7
A
170 179Right-handed alpha
Helix 8
AA8
A
180 188Right-handed 310
Helix 9
AA9
A
190 196Right-handed alpha
Helix 10
AB1
A
209 212Right-handed 310
Helix 11
AB2
A
230 235Right-handed alpha
Helix 12
AB3
A
306 320Right-handed alpha
Helix 13
AB4
A
320 325Right-handed alpha
Helix 14
AB5
A
330 340Right-handed alpha
Helix 15
AB6
A
340 345Right-handed alpha
Helix 16
AB7
A
348 353Right-handed alpha
Helix 17
AB8
A
356 358Right-handed 310
Helix 18
AB9
A
359 373Right-handed alpha
Helix 19
AC1
A
378 384Right-handed alpha
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There are 7 sheets in PDB entry 6LLM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 34first strand
Strand 2
A
132 137anti-parallel
Strand 3
A
126 129anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 48first strand
Strand 2
A
51 58anti-parallel
Strand 3
A
61 66anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 89first strand
Strand 2
A
95 98anti-parallel
Strand 3
A
104 107anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 167first strand
Strand 2
A
293 303anti-parallel
Strand 3
A
281 290anti-parallel
Strand 4
A
269 273anti-parallel
Strand 5
A
261 265anti-parallel
Strand 6
A
226 229anti-parallel
Strand 7
A
214 217anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 200first strand
Strand 2
A
252 253anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
203 205first strand
Strand 2
A
236 238anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
240 243first strand
Strand 2
A
246 250anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il