Analysis of interatomic Contacts of Structural Units in PDB entry:
6LM0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6LM0 entry

There are 3 chains in PDB entry 6LM0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -1SER 238
B
 SER -2ASN 224
C
 SER -1GLU 240
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 6LM0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
-1 27Right-handed alpha
Helix 2
AA2
A
33 55Right-handed alpha
Helix 3
AA3
A
69 91Right-handed alpha
Helix 4
AA4
A
93 116Right-handed alpha
Helix 5
AA5
A
120 142Right-handed alpha
Helix 6
AA6
A
142 149Right-handed alpha
Helix 7
AA7
A
152 171Right-handed alpha
Helix 8
AA8
A
171 180Right-handed alpha
Helix 9
AA9
A
188 213Right-handed alpha
Helix 10
AB1
A
215 224Right-handed alpha
Helix 11
AB2
A
224 237Right-handed alpha
Helix 12
AB3
B
-1 27Right-handed alpha
Helix 13
AB4
B
33 55Right-handed alpha
Helix 14
AB5
B
69 90Right-handed alpha
Helix 15
AB6
B
93 116Right-handed alpha
Helix 16
AB7
B
118 142Right-handed alpha
Helix 17
AB8
B
142 149Right-handed alpha
Helix 18
AB9
B
152 180Right-handed alpha
Helix 19
AC1
B
188 213Right-handed alpha
Helix 20
AC2
B
215 224Right-handed alpha
Helix 21
AC3
C
0 26Right-handed alpha
Helix 22
AC4
C
33 55Right-handed alpha
Helix 23
AC5
C
69 90Right-handed alpha
Helix 24
AC6
C
93 116Right-handed alpha
Helix 25
AC7
C
118 142Right-handed alpha
Helix 26
AC8
C
142 150Right-handed alpha
Helix 27
AC9
C
152 180Right-handed alpha
Helix 28
AD1
C
188 213Right-handed alpha
Helix 29
AD2
C
215 223Right-handed alpha
Helix 30
AD3
C
224 238Right-handed alpha
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There are 3 sheets in PDB entry 6LM0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 61first strand
Strand 2
A
66 67anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 61first strand
Strand 2
B
66 67anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
60 61first strand
Strand 2
C
66 67anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il