Analysis of interatomic Contacts of Structural Units in PDB entry:
6LMK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6LMK entry

There are 6 chains in PDB entry 6LMK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 9	LEU 394
B	SER 2	ASN 340
C	ALA 7	ARG 62
N	GLN 1	SER 128
R	GLN 27	GLY 421
E	HIS 1	THR 29

There are 31 helices in PDB entry 6LMK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	38	Right-handed alpha
Helix 2	AA2	A	52	56	Right-handed 310
Helix 3	AA3	A	264	278	Right-handed alpha
Helix 4	AA4	A	293	298	Right-handed alpha
Helix 5	AA5	A	298	303	Right-handed alpha
Helix 6	AA6	A	307	312	Right-handed alpha
Helix 7	AA7	A	313	316	Right-handed 310
Helix 8	AA8	A	331	352	Right-handed alpha
Helix 9	AA9	A	370	391	Right-handed alpha
Helix 10	AB1	B	5	25	Right-handed alpha
Helix 11	AB2	B	29	34	Right-handed alpha
Helix 12	AB3	B	35	37	Right-handed 310
Helix 13	AB4	C	8	24	Right-handed alpha
Helix 14	AB5	C	29	44	Right-handed alpha
Helix 15	AB6	N	61	65	Right-handed 310
Helix 16	AB7	N	87	91	Right-handed 310
Helix 17	AB8	R	28	48	Right-handed alpha
Helix 18	AB9	R	87	91	Right-handed 310
Helix 19	AC1	R	117	122	Right-handed 310
Helix 20	AC2	R	126	164	Right-handed alpha
Helix 21	AC3	R	173	202	Right-handed alpha
Helix 22	AC4	R	208	217	Right-handed alpha
Helix 23	AC5	R	220	251	Right-handed alpha
Helix 24	AC6	R	263	273	Right-handed alpha
Helix 25	AC7	R	273	289	Right-handed alpha
Helix 26	AC8	R	304	333	Right-handed alpha
Helix 27	AC9	R	342	347	Right-handed alpha
Helix 28	AD1	R	374	402	Right-handed alpha
Helix 29	AD2	R	404	419	Right-handed alpha
Helix 30	AD3	E	2	13	Right-handed alpha
Helix 31	AD4	E	13	29	Right-handed alpha

There are 11 sheets in PDB entry 6LMK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	209	214	first strand
Strand 2	A	217	223	anti-parallel
Strand 3	A	40	47	parallel
Strand 4	A	243	249	parallel
Strand 5	A	286	292	parallel
Strand 6	A	359	363	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	50	first strand
Strand 2	B	336	339	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	70	74	anti-parallel
Strand 3	B	78	81	anti-parallel
Strand 4	B	92	94	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	121	125	anti-parallel
Strand 4	B	135	139	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	149	151	first strand
Strand 2	B	156	159	anti-parallel
Strand 3	B	166	170	anti-parallel
Strand 4	B	175	180	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	199	203	anti-parallel
Strand 3	B	208	212	anti-parallel
Strand 4	B	217	222	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	241	245	anti-parallel
Strand 3	B	249	254	anti-parallel
Strand 4	B	259	265	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	275	278	first strand
Strand 2	B	284	288	anti-parallel
Strand 3	B	295	298	anti-parallel
Strand 4	B	304	307	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	3	7	first strand
Strand 2	N	19	25	anti-parallel
Strand 3	N	78	83	anti-parallel
Strand 4	N	68	73	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	11	12	first strand
Strand 2	N	123	126	parallel
Strand 3	N	92	95	anti-parallel
Strand 4	N	35	39	anti-parallel
Strand 5	N	45	50	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	75	80	first strand
Strand 2	R	95	100	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6LMK

Analysis of interatomic Contacts of Structural Units in PDB entry:
6LMK