Analysis of interatomic Contacts of Structural Units in PDB entry:
6LML

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6LML entry

There are 6 chains in PDB entry 6LML (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 5	PHE 354
B	ASN 35	ASN 340
C	LYS 29	PHE 61
D	VAL 2	LEU 247
E	HIS 1	THR 29
R	GLN 27	GLY 421

There are 33 helices in PDB entry 6LML. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	30	Right-handed alpha
Helix 2	AA2	A	45	53	Right-handed alpha
Helix 3	AA3	A	211	216	Right-handed 310
Helix 4	AA4	A	241	255	Right-handed alpha
Helix 5	AA5	A	256	260	Right-handed 310
Helix 6	AA6	A	270	278	Right-handed alpha
Helix 7	AA7	A	295	308	Right-handed alpha
Helix 8	AA8	A	331	348	Right-handed alpha
Helix 9	AA9	C	30	44	Right-handed alpha
Helix 10	AB1	C	45	48	Right-handed 310
Helix 11	AB2	D	28	32	Right-handed 310
Helix 12	AB3	D	62	65	Right-handed 310
Helix 13	AB4	E	2	27	Right-handed alpha
Helix 14	AB5	R	28	41	Right-handed alpha
Helix 15	AB6	R	41	46	Right-handed alpha
Helix 16	AB7	R	118	122	Right-handed 310
Helix 17	AB8	R	124	166	Right-handed alpha
Helix 18	AB9	R	171	182	Right-handed alpha
Helix 19	AC1	R	184	197	Right-handed alpha
Helix 20	AC2	R	210	216	Right-handed alpha
Helix 21	AC3	R	222	235	Right-handed alpha
Helix 22	AC4	R	240	253	Right-handed alpha
Helix 23	AC5	R	263	272	Right-handed alpha
Helix 24	AC6	R	274	277	Right-handed 310
Helix 25	AC7	R	278	288	Right-handed alpha
Helix 26	AC8	R	300	305	Right-handed alpha
Helix 27	AC9	R	308	330	Right-handed alpha
Helix 28	AD1	R	331	333	Right-handed 310
Helix 29	AD2	R	334	338	Right-handed 310
Helix 30	AD3	R	340	344	Right-handed 310
Helix 31	AD4	R	345	350	Right-handed alpha
Helix 32	AD5	R	375	403	Right-handed alpha
Helix 33	AD6	R	406	418	Right-handed alpha

There are 19 sheets in PDB entry 6LML. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	35	first strand
Strand 2	A	196	197	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	40	first strand
Strand 2	A	222	226	parallel
Strand 3	A	265	269	parallel
Strand 4	A	320	324	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	88	94	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	111	113	first strand
Strand 2	B	121	125	anti-parallel
Strand 3	B	134	139	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	151	first strand
Strand 2	B	157	158	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	169	170	first strand
Strand 2	B	175	176	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	199	203	anti-parallel
Strand 3	B	207	210	anti-parallel
Strand 4	B	221	223	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	241	245	anti-parallel
Strand 3	B	250	252	anti-parallel
Strand 4	B	262	263	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	294	298	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	328	329	first strand
Strand 2	B	337	338	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	7	first strand
Strand 2	D	18	25	anti-parallel
Strand 3	D	80	83	anti-parallel
Strand 4	D	68	69	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	12	first strand
Strand 2	D	115	119	parallel
Strand 3	D	92	94	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	59	60	first strand
Strand 2	D	49	51	anti-parallel
Strand 3	D	33	35	anti-parallel
Strand 4	D	97	99	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	38	39	first strand
Strand 2	D	45	46	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	146	148	first strand
Strand 2	D	244	246	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	155	159	first strand
Strand 2	D	212	216	anti-parallel
Strand 3	D	203	207	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	177	179	first strand
Strand 2	D	185	187	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	189	190	first strand
Strand 2	D	194	195	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	79	80	first strand
Strand 2	R	95	96	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6LML

Analysis of interatomic Contacts of Structural Units in PDB entry:
6LML