Analysis of interatomic Contacts of Structural Units in PDB entry:
6LN0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6LN0 entry

There is 1 chain in PDB entry 6LN0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 1ASP 425
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 6LN0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 6Right-handed 310
Helix 2
AA2
A
20 24Right-handed 310
Helix 3
AA3
A
43 54Right-handed alpha
Helix 4
AA4
A
54 65Right-handed alpha
Helix 5
AA5
A
76 81Right-handed 310
Helix 6
AA6
A
98 111Right-handed alpha
Helix 7
AA7
A
130 142Right-handed alpha
Helix 8
AA8
A
157 166Right-handed alpha
Helix 9
AA9
A
185 193Right-handed alpha
Helix 10
AB1
A
214 224Right-handed alpha
Helix 11
AB2
A
227 238Right-handed alpha
Helix 12
AB3
A
259 271Right-handed alpha
Helix 13
AB4
A
277 288Right-handed alpha
Helix 14
AB5
A
292 303Right-handed alpha
Helix 15
AB6
A
312 323Right-handed alpha
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There are 6 sheets in PDB entry 6LN0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 17first strand
Strand 2
A
146 152parallel
Strand 3
A
117 120parallel
Strand 4
A
29 34parallel
Strand 5
A
83 89parallel
Strand 6
A
71 74anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
180 184first strand
Strand 2
A
168 173anti-parallel
Strand 3
A
209 212parallel
Strand 4
A
194 195anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
244 247first strand
Strand 2
A
250 253anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
338 342first strand
Strand 2
A
327 332anti-parallel
Strand 3
A
369 373anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
345 346first strand
Strand 2
A
376 383parallel
Strand 3
A
416 423anti-parallel
Strand 4
A
391 395anti-parallel
Strand 5
A
398 402anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
358 360first strand
Strand 2
A
365 367anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il