Analysis of interatomic Contacts of Structural Units in PDB entry:
6LN7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6LN7 entry

There is 1 chain in PDB entry 6LN7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 1031
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 45 helices in PDB entry 6LN7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 17Right-handed alpha
Helix 2
AA2
A
25 37Right-handed alpha
Helix 3
AA3
A
48 55Right-handed alpha
Helix 4
AA4
A
56 58Right-handed 310
Helix 5
AA5
A
59 79Right-handed alpha
Helix 6
AA6
A
84 87Right-handed 310
Helix 7
AA7
A
88 118Right-handed alpha
Helix 8
AA8
A
143 145Right-handed 310
Helix 9
AA9
A
226 229Right-handed 310
Helix 10
AB1
A
230 235Right-handed alpha
Helix 11
AB2
A
247 275Right-handed alpha
Helix 12
AB3
A
276 280Right-handed 310
Helix 13
AB4
A
281 285Right-handed 310
Helix 14
AB5
A
287 307Right-handed alpha
Helix 15
AB6
A
310 328Right-handed alpha
Helix 16
AB7
A
337 342Right-handed alpha
Helix 17
AB8
A
343 345Right-handed 310
Helix 18
AB9
A
407 420Right-handed alpha
Helix 19
AC1
A
439 452Right-handed alpha
Helix 20
AC2
A
469 477Right-handed alpha
Helix 21
AC3
A
516 522Right-handed alpha
Helix 22
AC4
A
537 553Right-handed alpha
Helix 23
AC5
A
582 587Right-handed alpha
Helix 24
AC6
A
605 616Right-handed alpha
Helix 25
AC7
A
627 639Right-handed alpha
Helix 26
AC8
A
654 659Right-handed alpha
Helix 27
AC9
A
661 672Right-handed alpha
Helix 28
AD1
A
679 693Right-handed alpha
Helix 29
AD2
A
706 711Right-handed alpha
Helix 30
AD3
A
723 729Right-handed alpha
Helix 31
AD4
A
739 781Right-handed alpha
Helix 32
AD5
A
787 799Right-handed alpha
Helix 33
AD6
A
800 805Right-handed alpha
Helix 34
AD7
A
806 809Right-handed 310
Helix 35
AD8
A
829 857Right-handed alpha
Helix 36
AD9
A
865 871Right-handed alpha
Helix 37
AE1
A
872 875Right-handed 310
Helix 38
AE2
A
886 891Right-handed 310
Helix 39
AE3
A
892 913Right-handed alpha
Helix 40
AE4
A
925 928Right-handed 310
Helix 41
AE5
A
929 949Right-handed alpha
Helix 42
AE6
A
951 957Right-handed alpha
Helix 43
AE7
A
962 974Right-handed alpha
Helix 44
AE8
A
974 992Right-handed alpha
Helix 45
AE9
A
1015 1030Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 6LN7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 141first strand
Strand 2
A
126 130anti-parallel
Strand 3
A
150 153anti-parallel
Strand 4
A
219 225anti-parallel
Strand 5
A
162 168anti-parallel
Strand 6
A
207 208anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 189first strand
Strand 2
A
173 176anti-parallel
Strand 3
A
213 216anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
331 333first strand
Strand 2
A
732 734anti-parallel
Strand 3
A
715 719parallel
Strand 4
A
698 701parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 350first strand
Strand 2
A
619 623parallel
Strand 3
A
674 676parallel
Strand 4
A
651 653parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
395 396first strand
Strand 2
A
376 384anti-parallel
Strand 3
A
362 373anti-parallel
Strand 4
A
524 529parallel
Strand 5
A
532 535anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
532 535first strand
Strand 2
A
524 529anti-parallel
Strand 3
A
590 599parallel
Strand 4
A
362 373anti-parallel
Strand 5
A
376 384anti-parallel
Strand 6
A
395 396anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
395 396first strand
Strand 2
A
376 384anti-parallel
Strand 3
A
362 373anti-parallel
Strand 4
A
590 599anti-parallel
Strand 5
A
558 566anti-parallel
Strand 6
A
510 515anti-parallel
Strand 7
A
493 500anti-parallel
Strand 8
A
479 488anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
424 428first strand
Strand 2
A
433 437anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il