Analysis of interatomic Contacts of Structural Units in PDB entry:
6LN8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6LN8 entry

There is 1 chain in PDB entry 6LN8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 1031
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 6LN8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 7Right-handed 310
Helix 2
AA2
A
8 16Right-handed alpha
Helix 3
AA3
A
25 34Right-handed alpha
Helix 4
AA4
A
48 57Right-handed alpha
Helix 5
AA5
A
59 77Right-handed alpha
Helix 6
AA6
A
84 118Right-handed alpha
Helix 7
AA7
A
143 145Right-handed 310
Helix 8
AA8
A
226 229Right-handed 310
Helix 9
AA9
A
230 242Right-handed alpha
Helix 10
AB1
A
247 276Right-handed alpha
Helix 11
AB2
A
290 306Right-handed alpha
Helix 12
AB3
A
310 328Right-handed alpha
Helix 13
AB4
A
336 340Right-handed 310
Helix 14
AB5
A
407 421Right-handed alpha
Helix 15
AB6
A
439 452Right-handed alpha
Helix 16
AB7
A
463 468Right-handed alpha
Helix 17
AB8
A
469 478Right-handed alpha
Helix 18
AB9
A
516 522Right-handed alpha
Helix 19
AC1
A
537 552Right-handed alpha
Helix 20
AC2
A
581 586Right-handed alpha
Helix 21
AC3
A
605 616Right-handed alpha
Helix 22
AC4
A
627 639Right-handed alpha
Helix 23
AC5
A
653 659Right-handed alpha
Helix 24
AC6
A
661 672Right-handed alpha
Helix 25
AC7
A
679 693Right-handed alpha
Helix 26
AC8
A
703 705Right-handed 310
Helix 27
AC9
A
706 711Right-handed alpha
Helix 28
AD1
A
723 730Right-handed alpha
Helix 29
AD2
A
739 781Right-handed alpha
Helix 30
AD3
A
787 806Right-handed alpha
Helix 31
AD4
A
807 809Right-handed 310
Helix 32
AD5
A
814 818Right-handed 310
Helix 33
AD6
A
829 857Right-handed alpha
Helix 34
AD7
A
865 871Right-handed alpha
Helix 35
AD8
A
873 877Right-handed 310
Helix 36
AD9
A
887 891Right-handed 310
Helix 37
AE1
A
892 913Right-handed alpha
Helix 38
AE2
A
925 928Right-handed 310
Helix 39
AE3
A
929 949Right-handed alpha
Helix 40
AE4
A
951 956Right-handed alpha
Helix 41
AE5
A
962 974Right-handed alpha
Helix 42
AE6
A
974 990Right-handed alpha
Helix 43
AE7
A
1015 1030Right-handed alpha
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There are 7 sheets in PDB entry 6LN8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 141first strand
Strand 2
A
126 130anti-parallel
Strand 3
A
150 154anti-parallel
Strand 4
A
218 225anti-parallel
Strand 5
A
162 168anti-parallel
Strand 6
A
207 208anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 189first strand
Strand 2
A
173 176anti-parallel
Strand 3
A
213 216anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
332 333first strand
Strand 2
A
732 734anti-parallel
Strand 3
A
715 719parallel
Strand 4
A
697 701parallel
Strand 5
A
347 350parallel
Strand 6
A
619 623parallel
Strand 7
A
674 675parallel
Strand 8
A
651 652parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
395 396first strand
Strand 2
A
377 384anti-parallel
Strand 3
A
362 372anti-parallel
Strand 4
A
524 529parallel
Strand 5
A
532 535anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
395 396first strand
Strand 2
A
377 384anti-parallel
Strand 3
A
362 372anti-parallel
Strand 4
A
590 599anti-parallel
Strand 5
A
524 529parallel
Strand 6
A
532 535anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
395 396first strand
Strand 2
A
377 384anti-parallel
Strand 3
A
362 372anti-parallel
Strand 4
A
590 599anti-parallel
Strand 5
A
559 566anti-parallel
Strand 6
A
510 515anti-parallel
Strand 7
A
493 500anti-parallel
Strand 8
A
479 488anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
425 428first strand
Strand 2
A
433 436anti-parallel
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