Analysis of interatomic Contacts of Structural Units in PDB entry:
6LN9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6LN9 entry

There is 1 chain in PDB entry 6LN9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 1031
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 6LN9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 17Right-handed alpha
Helix 2
AA2
A
25 37Right-handed alpha
Helix 3
AA3
A
48 50Right-handed 310
Helix 4
AA4
A
51 57Right-handed alpha
Helix 5
AA5
A
60 76Right-handed alpha
Helix 6
AA6
A
89 115Right-handed alpha
Helix 7
AA7
A
116 120Right-handed 310
Helix 8
AA8
A
230 242Right-handed alpha
Helix 9
AA9
A
247 277Right-handed alpha
Helix 10
AB1
A
291 306Right-handed alpha
Helix 11
AB2
A
309 327Right-handed alpha
Helix 12
AB3
A
407 419Right-handed alpha
Helix 13
AB4
A
439 452Right-handed alpha
Helix 14
AB5
A
463 468Right-handed alpha
Helix 15
AB6
A
469 476Right-handed alpha
Helix 16
AB7
A
520 522Right-handed 310
Helix 17
AB8
A
537 552Right-handed alpha
Helix 18
AB9
A
581 586Right-handed alpha
Helix 19
AC1
A
606 616Right-handed alpha
Helix 20
AC2
A
627 638Right-handed alpha
Helix 21
AC3
A
654 659Right-handed alpha
Helix 22
AC4
A
661 672Right-handed alpha
Helix 23
AC5
A
679 693Right-handed alpha
Helix 24
AC6
A
706 711Right-handed alpha
Helix 25
AC7
A
723 729Right-handed alpha
Helix 26
AC8
A
739 780Right-handed alpha
Helix 27
AC9
A
787 807Right-handed alpha
Helix 28
AD1
A
829 857Right-handed alpha
Helix 29
AD2
A
888 891Right-handed 310
Helix 30
AD3
A
892 914Right-handed alpha
Helix 31
AD4
A
920 924Right-handed 310
Helix 32
AD5
A
925 928Right-handed 310
Helix 33
AD6
A
929 949Right-handed alpha
Helix 34
AD7
A
951 955Right-handed 310
Helix 35
AD8
A
962 974Right-handed alpha
Helix 36
AD9
A
974 990Right-handed alpha
Helix 37
AE1
A
1014 1028Right-handed alpha
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There are 8 sheets in PDB entry 6LN9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 141first strand
Strand 2
A
126 130anti-parallel
Strand 3
A
150 153anti-parallel
Strand 4
A
219 223anti-parallel
Strand 5
A
163 167anti-parallel
Strand 6
A
207 208anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 188first strand
Strand 2
A
174 176anti-parallel
Strand 3
A
213 214anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
331 333first strand
Strand 2
A
732 734anti-parallel
Strand 3
A
717 719parallel
Strand 4
A
700 701parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 348first strand
Strand 2
A
619 620parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
394 396first strand
Strand 2
A
379 385anti-parallel
Strand 3
A
362 369anti-parallel
Strand 4
A
590 599anti-parallel
Strand 5
A
559 566anti-parallel
Strand 6
A
510 515anti-parallel
Strand 7
A
493 500anti-parallel
Strand 8
A
479 485anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
394 396first strand
Strand 2
A
379 385anti-parallel
Strand 3
A
362 369anti-parallel
Strand 4
A
590 599anti-parallel
Strand 5
A
524 529parallel
Strand 6
A
532 535anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
424 427first strand
Strand 2
A
434 437anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
622 623first strand
Strand 2
A
674 676parallel
Strand 3
A
652 653parallel
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